Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05260 ATGAATGATTATGCATACAAAGTTGAAAGCATGAATCGTTTAGTTCAATGGAGAGTTCATAATTTATCAACATGCACTTATATCAAAGCTGATCCATTCAAAATAGCTATGTGGAATTGGCATTTATCTGTGGAAAAGAATTGTGGTCTACGTATTGAATTATATCCAGAAATGTCCAAAGACAATTCTTCTCCAATTGCATCTTTCATAATTAGGATTCTAAGTTATGGTGGAAATAGCAAAATATTGACTCAATCAGAAATAAAAGATAAACTTCTTAGCAATAAGGATTGTTTTGTTTGGGAGATTGAGGTTCCATTACCTGGAAAATTCATAATTGACATAGAGTTTCTTGATTTGAAAACTACATGTACAAATGGTGGGGAAGCTTCTTCTATTTGGTCTAATGGATTTATACAGAAAACACAAAATGCAACAGCCCTTGAATCGCTTGGTCGAATGATAAGAGAAGGTATCTATACCGACATAACAATCAACGTCAATTCTGAGGGAAGCATAAGAGCTCATCGAGCTATTCTTGCTTCACAATCACCTGTTTTTCGCAGCATGTTTTCGCATAATGTTAAGGAGACCGATTTGTCTACCATAAACATCGAAGATATGTCAATTCAAGCTTGTCAAACATTTATAAATTTTCTTTACGGAACAGTCAATGATGACGAATTTCTTATGCATAGAGTAGACCTATTGCACGCCGCGGATAAGTATGATATCTATGACTTGAGAGAAGCGTGTCAAAAGAGTCTTCAAGAAGATATTAACACGAAAAATGTACTCGAGAGACTCCAAATTGCATCTTTGTTTCGATTAACAAAGCTGAAGATTAGTTGTATGCAATATCTTGTGAAATTTGGTAAAATATATGATGTTCAAGGTGATTTAACTGCATTCTTGCAAACTGCAGATAGAGATTTAATATGTGAAGTCTTTCACGAAATTCTTGATGCATGGAAAAAGTAA 981 0.3394 MNDYAYKVESMNRLVQWRVHNLSTCTYIKADPFKIAMWNWHLSVEKNCGLRIELYPEMSKDNSSPIASFIIRILSYGGNSKILTQSEIKDKLLSNKDCFVWEIEVPLPGKFIIDIEFLDLKTTCTNGGEASSIWSNGFIQKTQNATALESLGRMIREGIYTDITINVNSEGSIRAHRAILASQSPVFRSMFSHNVKETDLSTINIEDMSIQACQTFINFLYGTVNDDEFLMHRVDLLHAADKYDIYDLREACQKSLQEDINTKNVLERLQIASLFRLTKLKISCMQYLVKFGKIYDVQGDLTAFLQTADRDLICEVFHEILDAWKK 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05260 326 Gene3D Potassium Channel Kv1.1; Chain A 135 290 IPR011333 -
Trre9g05260 326 ProSiteProfiles BTB domain profile. 161 221 IPR000210 GO:0005515
Trre9g05260 326 CDD BTB_POZ_ZBTB_KLHL-like 160 243 - -
Trre9g05260 326 Pfam BTB/POZ domain 156 258 IPR000210 GO:0005515
Trre9g05260 326 SMART BTB_4 161 260 IPR000210 GO:0005515
Trre9g05260 326 PANTHER OS08G0495500 PROTEIN-RELATED 5 325 IPR044714 -
Trre9g05260 326 SUPERFAMILY POZ domain 145 258 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05260 Trre-Chr9 57585205 57586936 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre9g05260 BTB 1.2e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05260 K10523 - gmx:100790186 438.343