Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05250 ATGCCTCAGGATAGTAGCTTATTAAGCTCAATTTTCGCATCTCCTGCTTCGAAGAGAATATTGAATTTGAAGGGTTCAGTTTTTAACAATAGTGAGGTGAATGAGGAGATCAATGATCATGAATTAGCTTACAGGAAAGCAGAGGAAGCAGCTACAAGGAGGAATGAAGCAGCAGAATGGCTTCGAGAAATGGATGAAGTGGCTTCTTCATCACTCTCCAAACAACCTTCCGAGGAACAATTCTGTCTCGCTCTCCGCAATGGTCTCATTCTCTGCAACGTACTCAACAAAATCAATCCCGGTGCTATCCTCAAGGTGGTGGACAATCAAGTCCTTGCAGTTCACTCTCCAGAAGGACCAGCCCACTCTTGCATTCAGTATTTCGAAAACATGAAGAACTTTCTTGATGCTGTTAAGGATATGGCCCTTTTGACCTTTGAAGCTTCTGATTTGGAAAAGGGCGGTTCATCAAGCAAAGTCGTAGATTGCATTCTTTGTTTGAAAGGGTATCATGAATGGAAGCTATCAGGTGGAGTTGGGGTTTGGAGGTATGGAGGAACTGTCAGAATTACTTCTTTCCCCAAGGGAACTCCTTCTACATCTATTTTGGGCAGTGAAAGTGCTGAGGAGTCCCTTGATGAATCTCAGTCCTCACAGTATAAGCAGTTGCTTGAATTTCTTCGTATGTCTCAAGAGGTCTCAATCGAAGAAACCAGAACTGCTAGTGCTCTGGCTTTCCTGTTTGATCACTTTGGACTCAAACTTCTCCAGGCGTTCCTTAGAGAGATTGACGATGGGGTTGAAGATCTACCGCTCAATGCAATGGTAATTGATACATTTCTTAGCAAGATAGTAAGGGATTTCTCCACTTTACTTGTTTCTCAAGGCACTCAGCTTGCATTTTTTCTCAAGAAAATATTGAAAGGCGATAATGGTTCTCTCTCTAAGAGAGAATTCATGGAAGCTATAGCATTATATCTTAATCAAAGAAGTAGTTTGTCGTCAAATGATTTATCTAAATTCTGCATTTGTGGGGAAAAACGTGATAGCAGTGCTCAAAATAATGTCAAATTTTCATCCAAGTATGCTGAAATAATTGATGCGCAGCAGAAACAACTTGAGGGAATGAAATACTTACTAGAGGAGATAAAAAAGGATGTCAAACAGATTCAATCTGAATGGGACCAAGAATCGAGCAGGCTCGAGAATCATATAAAGAGTCTTGAGGTGACATCCTCTTCCTACCACAAAATTTTAGAGGAGAATCGATCTCTTTACAATCAAGTGATAGACCTCAAAGGATCCATTAGGGTCTATTGTAGAGTGAGACCCTTCTTAGGACAATCAAATGGACAATCTACAGTTGATTATATTGGAGAAAATGGAAACATAATGATTGTGAATCCCCTTAAGCAGGGAAAAGATGCTAGAAAAGTATTTTCATTCAATAAAGTGTTCGCAACTAATGCCACACAAGCACAAATATATTCCGATACAAAACCATTGGTTAGATCTGTTTTAGATGGCTATAATGCATGCATCTTTGCATATGGACAGACTGGCTCAGGGAAGACCTACACGATGAGTGGTCCGGATCTGATGACTGAAGAGACATGGGGTGTTAACTATAGGGCGTTGCGTGACTTATTTCACATATCAAAGGAAAGAGCAGAGGCAATAAACTATGAAGTTTCCGTCCAAATGATCGAAATATACAATGAACAAGTGAGAGATTTATTAGTCAATATACGAAACAACTCTCAATTGAATGGTCTTAACGTGCCTGATGCATGTTTGGTTCCGGTTAGTTGTACTCAAGATGTTCTTGATTTAATGAAAATTGGTCAGAGGAACCGTGCGGTGGGTGCTACCGCTCTAAATGAGCGAAGCAGCCGTTCTCATAGTGTGTTGACGATTCATGTCAGAGGAAGGGACTTAGTTTCTAATTCAGTTCTTAAGGGTTGTCTCCATCTTGTGGATTTGGCTGGGAGTGAGAGAGTTGAGAAATCCGAGGCTGTTGGCGAGAGACTAAAAGAGGCACAACATATTAATAAATCTCTTTCTGCACTTGGCGATGTTATCTCCGCTTTGGCGCAGAAAAGTCAACATATTCCTTACAGAAATAGCAAGCTTACACAAGTTTTACAAGATTCATTAGGTGGCCAGGCAAAGACTTTGATGTTTGTTCATATAAATCCCGAAATCAATGCCATTGGGGAGACAATTAGCACATTGAAGTTTGCTGAGAGGGTTGCATCCATTGAACTTGGAGCTGCTAAATCTAACAAAGAAACCGGTGAAATCCGAGAGCTCAAGGAAGAGATATCAAATATCAAGTTGGCATTGGAGAGGAAGGAAACTGAACTGGAGCAATGGAAATCTGGAAATGCACGGAATGCCACGGAATCTCAGAAACCAAGAGCCGCTTCACCTTTCCGTATGCCCAAATATGGTACCACAGGCAGTGTGAAGCCTGAAAATAGTCAAAGATCCATTGATGATAGAAGCTCTGAGGCAAAAAATTATTCTTCTGGTAAGCAACGAAGGTCGAGATTTCCCTCAACATTTATCGACAAGGACTCCATACCAAAAATGTCTCTTCTGTCTGAAGAAAAGTCAGTGAGCTCAGGAAAGCATAGATCACCATCACCTACAATCAGGAGATCAATATCCACCGATAGAGGTTCTGTCACTAAAAGCAAGATCAAAATTGACAATGCAGAAAACCAACCAATTTTGAAGCATTCATTTCTAACTAGAGTACCAGTAAATAAATCTCTTGCAACAATCACACCATCTATAGACAATAACTCAAGGGTCTATGTACATTCACAAGAGCCGGTGAAGCACGATAACATTTCCGAACCTCTCGTTAACTTTGAGAAAGTAAGCTTTAGGAAAGTTCATCAAGAAAACGAAGAGGAACCATCCAAACAACCATTTGGCGTAGTAAGACAAGGAAGTGTTAGGAAAAACAAAGCTGACAATAACATCAAGGCCAAACATCGTCAACCATCTCCCTTTAGGTTTCAAAAGACCGATTTAGTACCTAAATCTATTCCTGGCATGGAAATTGCTGGTGAAATTGTGGAGGCACCTCGAAAGATTGATTTCTCTGAGACCGAAAATGATTTTAACTTTATGGAGTCTGCAATCAACGGTGTATTAAATGTTCCAAAAAAACGTCGCAACATCTCAAGGAATTCTCAGAACCTTGATGACCCAAGAGGAATTGTGCAAGGAGCTGAACCATTGTTGTCTAGTAAAGTTGAAAACAAAATTTCAAACGGTCAAGGTCGCAATCTTAAGGAAGTCAATACATCCATGCATGACTTTAAAAGAAGCCGATCGACACCACGAGGAAAGTTTTTTGTTTTATGA 3381 0.4037 MPQDSSLLSSIFASPASKRILNLKGSVFNNSEVNEEINDHELAYRKAEEAATRRNEAAEWLREMDEVASSSLSKQPSEEQFCLALRNGLILCNVLNKINPGAILKVVDNQVLAVHSPEGPAHSCIQYFENMKNFLDAVKDMALLTFEASDLEKGGSSSKVVDCILCLKGYHEWKLSGGVGVWRYGGTVRITSFPKGTPSTSILGSESAEESLDESQSSQYKQLLEFLRMSQEVSIEETRTASALAFLFDHFGLKLLQAFLREIDDGVEDLPLNAMVIDTFLSKIVRDFSTLLVSQGTQLAFFLKKILKGDNGSLSKREFMEAIALYLNQRSSLSSNDLSKFCICGEKRDSSAQNNVKFSSKYAEIIDAQQKQLEGMKYLLEEIKKDVKQIQSEWDQESSRLENHIKSLEVTSSSYHKILEENRSLYNQVIDLKGSIRVYCRVRPFLGQSNGQSTVDYIGENGNIMIVNPLKQGKDARKVFSFNKVFATNATQAQIYSDTKPLVRSVLDGYNACIFAYGQTGSGKTYTMSGPDLMTEETWGVNYRALRDLFHISKERAEAINYEVSVQMIEIYNEQVRDLLVNIRNNSQLNGLNVPDACLVPVSCTQDVLDLMKIGQRNRAVGATALNERSSRSHSVLTIHVRGRDLVSNSVLKGCLHLVDLAGSERVEKSEAVGERLKEAQHINKSLSALGDVISALAQKSQHIPYRNSKLTQVLQDSLGGQAKTLMFVHINPEINAIGETISTLKFAERVASIELGAAKSNKETGEIRELKEEISNIKLALERKETELEQWKSGNARNATESQKPRAASPFRMPKYGTTGSVKPENSQRSIDDRSSEAKNYSSGKQRRSRFPSTFIDKDSIPKMSLLSEEKSVSSGKHRSPSPTIRRSISTDRGSVTKSKIKIDNAENQPILKHSFLTRVPVNKSLATITPSIDNNSRVYVHSQEPVKHDNISEPLVNFEKVSFRKVHQENEEEPSKQPFGVVRQGSVRKNKADNNIKAKHRQPSPFRFQKTDLVPKSIPGMEIAGEIVEAPRKIDFSETENDFNFMESAINGVLNVPKKRRNISRNSQNLDDPRGIVQGAEPLLSSKVENKISNGQGRNLKEVNTSMHDFKRSRSTPRGKFFVL 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05250 1126 Coils Coil 366 393 - -
Trre9g05250 1126 SMART kinesin_4 433 762 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre9g05250 1126 CDD CH_AtKIN14-like 53 168 - -
Trre9g05250 1126 MobiDBLite consensus disorder prediction 789 899 - -
Trre9g05250 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 435 791 IPR027417 -
Trre9g05250 1126 SUPERFAMILY Calponin-homology domain, CH-domain 49 192 IPR036872 -
Trre9g05250 1126 PRINTS Kinesin heavy chain signature 704 725 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre9g05250 1126 PRINTS Kinesin heavy chain signature 509 530 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre9g05250 1126 PRINTS Kinesin heavy chain signature 655 673 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre9g05250 1126 PRINTS Kinesin heavy chain signature 624 641 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre9g05250 1126 SMART ch_5 53 170 IPR001715 GO:0005515
Trre9g05250 1126 PANTHER KINESIN-LIKE PROTEIN KLP-3 58 903 IPR027640 GO:0003777|GO:0007018
Trre9g05250 1126 Gene3D - 43 172 IPR036872 -
Trre9g05250 1126 ProSiteProfiles Kinesin motor domain profile. 435 754 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre9g05250 1126 Pfam Kinesin motor domain 441 754 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre9g05250 1126 MobiDBLite consensus disorder prediction 868 899 - -
Trre9g05250 1126 MobiDBLite consensus disorder prediction 828 845 - -
Trre9g05250 1126 Gene3D Kinesin motor domain 377 756 IPR036961 -
Trre9g05250 1126 FunFam kinesin-like protein KIN-14F 430 795 - -
Trre9g05250 1126 Coils Coil 761 788 - -
Trre9g05250 1126 Pfam Calponin homology (CH) domain 53 172 IPR001715 GO:0005515
Trre9g05250 1126 Coils Coil 30 50 - -
Trre9g05250 1126 ProSiteProfiles Calponin homology (CH) domain profile. 51 172 IPR001715 GO:0005515
Trre9g05250 1126 FunFam kinesin-like protein KIN-14F 43 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05250 Trre-Chr9 57516263 57522626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05250 426 771 Calmodulin-binding Proteins AT5G65930 42.017 3.14e-75 270