Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05245 ATGTCTACAAACTTAAAGAATCTTTCACTTTTTCACAAAAAAATCATTTCCCTCACCTTGCTTCTTTTCTCAATAAACTTTCTTTTCTTTCAATGTTGTAACTCTCTTGATGAACAAGGTCAAGCTCTTTTAGCATGGAAGGAGAGTTTTAACGTTACTTTGGATGCATTAGCATCTTGGAATCTCTCAAACCAAACACCATGCAATTGGTTTGGTGTGAAGTGCAATTTACAAGGAGAGGTTGAAGAGATAAATTTGAAGTCATTGAACTTACAAGGTTCATCATTGCCTTCAAATTTTCAACTTCTCAAGTCCTTGAAGGTGCTTGTCCTCTCAGCAACCAACATAACAGGAAGGATTCCAAAACAAATTGGAGACTATCAAGAGCTTGTTTTCATTGATCTCAGTGAAAATTCTCTCTTTGGTGAAATCCCAGAAGAAATTTGCAGGCTAAGCAAACTTCAAAATTTAGCTCTTCATACAAACTCTCTTGAAGGAAATATTCCATTCAACATAGGAAATTTATCAAGTCTTGTGAACTTGACACTCCATGACAATAAATTCAGTGGGGAAATTCCAAAGAGTATTGGTTCCTTAAGTAAGCTTCAAGTATTCAGAGCAGGAGGGAATTCAAACCTCAAGGGTGAGCTGCCATCGGAGATCGGAAACTGCACCAACTTGGTCATGTTAGGCCTCGCAGAAACCGGCATTTCCGGTAGTATTCCTTCTTCAATAGGGATGCTGAAGAAAATACAGACCATAGCCATTTACACAACTCAGTTGTCAGGCTCTATTCCCGAAGACATAGGAAATTGCAGTGAGTTGCAGAATCTTTATTTGTATCAGAACTCGATTTCTGGTCCAATTCCGCGTCAAATTGGAGAGCTGAACAAACTTCAGAGTCTACTTTTATGGCAAAACAATATGGTAGGGACAATACCAGAAGAGCTTGGAAACTGCAGAGATCTCAGTGAGATAGATTTGTCAGAAAATCTTCTCACAGGTAGCATACCAATCAGTTTCGGGAAGCTATCAAATCTAAAAGGACTTCAGCTGAGTGTTAATCAACTGTCAGGTATTATACCACCTGAAATTTCAAACTGCAGTTCTTTGACTCAGCTTGAAGTTGACAACAATGCTATTTCTGGTGAGATTCCTTCTGTTATTGGCAACTTGAGAAGCTTGACACTCTTCTATGCATGGAAGAACAAGCTAACAGGAAAAATCCCAAATAGTCTTTCAGAGTGCAAAGATCTTCAGTCACTTGATTTTTCATACAATAACTTAACTGGTTCAATACCAAAACAACTATTTTTGTTGAAAAATCTCACTCAACTTATGCTTCTTTCCAATGATTTGGAAGGATTCATACCAGCTGATATCAGTAACTGCACAAGTCTCTATAGGTTGAGGTTAAGTCAGAATAGACTAGTTGGTAACATTCCATCTGAGATTGCCAACTTGAAAAAATTGAATTTTTTGGACTTGAACACCAATCATCTTGTGGGGGAGATTCCTCCAACATTATCAAGATGTCAAAATCTTGAGTTTATTGATCTCTCACACAACAAGCTCTCGGGGAATCTAGATGCTCTTTCTAGCCTTCAGAATCTTGTTTCCTTAAATGTTTCCTTCAATGAATTCTCTGGTGAATTGCCTAACACAACATTGTTTAGGAAACTCCCTCTCAGTGATCTCACTGGAAATAAAGGTCTTCATATTTCGGAAGGTGTTGTAACTCCAGCAATCAGAACAAGAGCCAAAAGTCATGTTAGATTAGATATGGAGATTATATTGTTAATTCTCTTGAGCACCATTCTAGTACTAATACTTTTCAAATTCTATGTCATGGTACGTGATTTTATTGCTGTGGAAGCATTCTGGAGAAATTTCGAAGCACCCAATAAGCTTTTGTATCGGATGTTTGATTTCTCTATTGATAACATTGTCAAGAATTTCAAAGCTTCCAATATGATTGACATTACAAGCTCTGGAGTTTTGTACAAGATAACAACTCCAAATGGCCATATACTAGCAGTTAAAAAGATGTGGCCAGATTCTGAAGCCTTAAGTTCAGAAATTCAAATATTAAGTTCAATAAAACATAAGAATATCATCAAGCTTCTTGGTTGGGGACCCTATAGGAATAGGATGCTGCAGTGTTATGAGTACTTCCCTAGTCTGAGCTCATTGCTTCATGGTTCAGAAAAGGGAAAGTTAGATTGGGATACCAGGTTTGAAGTCATCTTAGGCCTAGCTCAAGCACTTGCATATTTGCACCATGATTGTGTGCCTTCTATATTGCATGGAGATGTCAAAGCAACAAGTCTTTTATTAGGTCCTGGCTATCATCCTTACCTTGCTAACTTTGACCTGGCAAGAATAGAAAGTGAAAAAGGCGACGATGCTAAATCCAATTCAGTTCAAAGACCTCACTACACCGCGAGTTCCCATGGATACACAGATCCTGAGCTTGACTCAATGCAGAAGATCGATGAGAAAACCGACGTGTACAGTTTCGGTGTGATCGTACTTGAGGTGCTGACAGGAAGGCAGCCATTAGATCCAACTCTGCCAGGAGGTATACATTTGGTTCAATGGGTTAAGAATCACTTATCTAGCAAAGGAAACCCATTAGAAATTCTTGACTCAAAGCTGAGAGAGAGGACTGAACTTACTGCTAAGCATGAAATACTACAAACTCTAGCTGTGTCAATTTTATGTGTCAGTACGAAAGCATATGAACGTCCAACGATGAAAGACGCCATTGCAATGTTCAACCAATTTCGATATTTTGTTTAG 2802 0.3829 MSTNLKNLSLFHKKIISLTLLLFSINFLFFQCCNSLDEQGQALLAWKESFNVTLDALASWNLSNQTPCNWFGVKCNLQGEVEEINLKSLNLQGSSLPSNFQLLKSLKVLVLSATNITGRIPKQIGDYQELVFIDLSENSLFGEIPEEICRLSKLQNLALHTNSLEGNIPFNIGNLSSLVNLTLHDNKFSGEIPKSIGSLSKLQVFRAGGNSNLKGELPSEIGNCTNLVMLGLAETGISGSIPSSIGMLKKIQTIAIYTTQLSGSIPEDIGNCSELQNLYLYQNSISGPIPRQIGELNKLQSLLLWQNNMVGTIPEELGNCRDLSEIDLSENLLTGSIPISFGKLSNLKGLQLSVNQLSGIIPPEISNCSSLTQLEVDNNAISGEIPSVIGNLRSLTLFYAWKNKLTGKIPNSLSECKDLQSLDFSYNNLTGSIPKQLFLLKNLTQLMLLSNDLEGFIPADISNCTSLYRLRLSQNRLVGNIPSEIANLKKLNFLDLNTNHLVGEIPPTLSRCQNLEFIDLSHNKLSGNLDALSSLQNLVSLNVSFNEFSGELPNTTLFRKLPLSDLTGNKGLHISEGVVTPAIRTRAKSHVRLDMEIILLILLSTILVLILFKFYVMVRDFIAVEAFWRNFEAPNKLLYRMFDFSIDNIVKNFKASNMIDITSSGVLYKITTPNGHILAVKKMWPDSEALSSEIQILSSIKHKNIIKLLGWGPYRNRMLQCYEYFPSLSSLLHGSEKGKLDWDTRFEVILGLAQALAYLHHDCVPSILHGDVKATSLLLGPGYHPYLANFDLARIESEKGDDAKSNSVQRPHYTASSHGYTDPELDSMQKIDEKTDVYSFGVIVLEVLTGRQPLDPTLPGGIHLVQWVKNHLSSKGNPLEILDSKLRERTELTAKHEILQTLAVSILCVSTKAYERPTMKDAIAMFNQFRYFV 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05245 933 ProSiteProfiles Leucine-rich repeat profile. 514 536 IPR001611 GO:0005515
Trre9g05245 933 Gene3D Phosphorylase Kinase; domain 1 629 724 - -
Trre9g05245 933 SMART LRR_typ_2 535 560 IPR003591 -
Trre9g05245 933 SMART LRR_typ_2 344 368 IPR003591 -
Trre9g05245 933 SMART LRR_typ_2 440 464 IPR003591 -
Trre9g05245 933 SMART LRR_typ_2 296 320 IPR003591 -
Trre9g05245 933 SMART LRR_typ_2 488 512 IPR003591 -
Trre9g05245 933 SMART LRR_typ_2 175 199 IPR003591 -
Trre9g05245 933 Gene3D Ribonuclease Inhibitor 193 292 IPR032675 -
Trre9g05245 933 Gene3D Ribonuclease Inhibitor 36 192 IPR032675 -
Trre9g05245 933 ProSiteProfiles Protein kinase domain profile. 653 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g05245 933 ProSiteProfiles Leucine-rich repeat profile. 418 440 IPR001611 GO:0005515
Trre9g05245 933 FunFam Leucine-rich receptor-like protein kinase family protein 36 198 - -
Trre9g05245 933 Pfam Leucine rich repeat 323 381 IPR001611 GO:0005515
Trre9g05245 933 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Trre9g05245 933 MobiDBLite consensus disorder prediction 801 820 - -
Trre9g05245 933 SUPERFAMILY L domain-like 318 572 - -
Trre9g05245 933 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 210 927 - -
Trre9g05245 933 Gene3D Ribonuclease Inhibitor 295 576 IPR032675 -
Trre9g05245 933 Pfam Protein kinase domain 664 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g05245 933 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 211 434 - -
Trre9g05245 933 SUPERFAMILY L domain-like 54 361 - -
Trre9g05245 933 Gene3D Transferase(Phosphotransferase) domain 1 726 931 - -
Trre9g05245 933 FunFam Putative LRR receptor-like serine/threonine-protein kinase 493 578 - -
Trre9g05245 933 SUPERFAMILY Protein kinase-like (PK-like) 641 929 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05245 Trre-Chr9 57500192 57503146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05245 96 932 Receptor kinase-like Gene Family AT5G56040 47.235 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre9g05245 Pkinase 2e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05245 - - cam:101492613 1373.99