Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05243 ATGGAGAGACCTGTTCAGCCCATTAAGCAGCTTCACAATCGCAAGGAGCTTTGGAAGATTGCTGTGAAGATTAAAGAAAAATGGAATGTTGTGAAGGATGGCAAACAGAGCTTCGAAATGCTGGTAGTTGATGAGAAGGGAGATGACATTTTAGTTATGGTTCCTCATGAGTTAAATGAAACCCTTGACAAACAAATCATCGAGAACAACACTTACTGCTTCCAAAACTTCCAAGTCCTAAAAAATGATGATCAATTTAAGCTCTCTGAAAATCAATTCAAACTGAGGTTCAATGGATCAACTCGGATTTCTGATGTTAATATACATCAAATTTTGGATCCGATTCCGAAATGGAAAGATTTTGTTGAGATACTGTCTGGAAAATGGCGTGAAGATGTATTATATGATGTTATTGGAGTCTTAGATGAGATTGGATATACACAACCAACAAAAGGAAGCCGTAAAGTTCAGGTTAATTTCAAACTTAGAGACCTCAGTGACAATAGGATCTGTTGCACTTTGTGGGAAGATTATGCTATCAAGTTCATCACTTACACTAGAGAAAAGACTGATGTTGGAGCTACTCTCATTGCCATGAAGTATGCAAAGATTAAGCCAGAAGGGCAATACCCGTTAACTGTTTCAAATACATGGTCAAATACTAAACTTTTTATCAATGATGACATCAATGCTATTGTTGAGTTCAAAAAAAGATTAGATGTGGCTATCTCTGCTGGAACATTTGAGCCTGTTGTTGATACACCATCACAGCTTATGAGCCAATATTCTGGAGGCTCCCAGTATACTCCGGAACAAAAATTGCTTCACAAAAGTGAAATCTTGCCTCTTTCTAAAATTATCCTTCTGCCTATGGATACACAAGTTGTAACTGTTATTGACACAATTTGCGTCAAGGCAAGTAAGAATGGTTGGTATTTTCAAGGTTGCCTTCATTGCCCCAAAGCTGCATCGGGACCTGCTCCTCCCTATACTTGCATTGATGGTCACTCAACTGAAATGCAACTCTGGAAGTACAGATTGGATGTAGATGTTTGTTATAACAACACTGAATCAGTTTTTACATTTTGGGACCGTGAATGCACACAAATATTGGGAATATCTGCAGCAGACCTTCGTGACAAAATGATTGCAGCTGACATTACTGATCCAACAATTTATCCTGTTGAAATTGACAAGATAGAGGGTAAAACTTTGGCAGTTAAAATTAAGTGGCAGTATAAGTGGAAGAATGCATCTGTGAATCAAGTTCATGTTGGGGAACAGTTTATTGCTGATATCAAATCGCGATTTCCATCTTCTCAGGAAGGAACACCTATTCCAAAAATTGAGAATCCTATCCTTGAGGCCATTTCTACTTCTCAGTCGGTTGAACAATCTGATGATCTTGTCCTTCCTACGGTCTCTTTGTCTGATGAGATTGATCCTTCTCAAGTCTCAATGATTACACCTTCAAAAAGAAATGGATCGGCTGTCAATTCGGGTAATCAGAATGAAGAAGTTAAAGACTTGATTGGAAGTAAGATGTCTTCAACAAAAATCACCAGGTCTAAGCATGCAAAAAAAGAGTAA 1590 0.3805 MERPVQPIKQLHNRKELWKIAVKIKEKWNVVKDGKQSFEMLVVDEKGDDILVMVPHELNETLDKQIIENNTYCFQNFQVLKNDDQFKLSENQFKLRFNGSTRISDVNIHQILDPIPKWKDFVEILSGKWREDVLYDVIGVLDEIGYTQPTKGSRKVQVNFKLRDLSDNRICCTLWEDYAIKFITYTREKTDVGATLIAMKYAKIKPEGQYPLTVSNTWSNTKLFINDDINAIVEFKKRLDVAISAGTFEPVVDTPSQLMSQYSGGSQYTPEQKLLHKSEILPLSKIILLPMDTQVVTVIDTICVKASKNGWYFQGCLHCPKAASGPAPPYTCIDGHSTEMQLWKYRLDVDVCYNNTESVFTFWDRECTQILGISAADLRDKMIAADITDPTIYPVEIDKIEGKTLAVKIKWQYKWKNASVNQVHVGEQFIADIKSRFPSSQEGTPIPKIENPILEAISTSQSVEQSDDLVLPTVSLSDEIDPSQVSMITPSKRNGSAVNSGNQNEEVKDLIGSKMSSTKITRSKHAKKE 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05243 529 Gene3D - 271 435 IPR012340 -
Trre9g05243 529 Pfam Domain of unknown function DUF223 39 106 IPR003871 -
Trre9g05243 529 Gene3D - 117 248 IPR012340 -
Trre9g05243 529 CDD RPA1_DBD_B_like 136 240 - -
Trre9g05243 529 MobiDBLite consensus disorder prediction 483 529 - -
Trre9g05243 529 SUPERFAMILY Nucleic acid-binding proteins 4 103 IPR012340 -
Trre9g05243 529 CDD RPA1_DBD_A_like 19 103 - -
Trre9g05243 529 SUPERFAMILY Nucleic acid-binding proteins 130 241 IPR012340 -
Trre9g05243 529 MobiDBLite consensus disorder prediction 483 519 - -
Trre9g05243 529 SUPERFAMILY Nucleic acid-binding proteins 304 417 IPR012340 -
Trre9g05243 529 Gene3D - 3 107 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05243 Trre-Chr9 57458765 57461789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05243 1 380 Core DNA Replication Machinery Family AT5G08020 21.303 1.46e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05243 - - tpra:123887332 538.495