Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05239 ATGGAGGATGTCGCTCATCTCCATAGAAAAGGTATTAGACATCTCAACATTACTCCGGAAAACATTCTTCTTTTTGGCGATGGTAAGTCTGACTTGACGGCGAAACTCGCCAATTTCACCTTTCACAAATCCGTAGATCATGTCTTCTCTGCGAACGAAGGAACTATAGGGTGGAAGAGCCCTGAAAGACTTCATGGACGCCTCGAAGGACTTCCATCGGATATATTTAACCTGACACTGGGGATTTTCCATCTCTTTTCTGGCGGCGGTCATCGATTTGGAAAGATTCAAAATATACAGCAATGTGAAGATAATATCAAGCTTAATCATCCATATAAAAGTTTAGCGCAATTACTTTCGCTAGACGCCGTCGATTTTTTGAAGGACATGTTGGCTGACGAAGCCACACATATTTAA 417 0.4197 MEDVAHLHRKGIRHLNITPENILLFGDGKSDLTAKLANFTFHKSVDHVFSANEGTIGWKSPERLHGRLEGLPSDIFNLTLGIFHLFSGGGHRFGKIQNIQQCEDNIKLNHPYKSLAQLLSLDAVDFLKDMLADEATHI 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05239 138 Gene3D Transferase(Phosphotransferase) domain 1 1 137 - -
Trre9g05239 138 ProSiteProfiles Protein kinase domain profile. 1 138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g05239 138 Pfam Protein kinase domain 4 134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g05239 138 PANTHER IRE1-RELATED 4 134 IPR045133 GO:0004521|GO:0004674|GO:0030968
Trre9g05239 138 SUPERFAMILY Protein kinase-like (PK-like) 4 133 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05239 Trre-Chr9 57428736 57429377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05239 4 134 AGC Kinase Gene Family AT3G08720 31.852 6.04e-10 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Trre9g05239 Pkinase 3.6e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05239 - K12132 lja:Lj4g3v1330210.1 59.6918