Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05235 ATGAATTCTAGGTGTTTGTTGAATTCCAACAGCATAGTTCAATCTTCTTCAAGTTATGCAGAAAGAGAAGATAGAGATGGTAGTTCGCGAAATAGACCTCAACTTGTCTCGTCGCCGCCAACGTTTTCGGTTCGGATGGCGATGAGAATATCAAGATCAAGATGGTTTACTTTGTTAAGAAGAGTTTTTCATTATCAGAATGGATCAAGGTCTAACCTTGGCTCTAATCCTTTCAATTCTAGTACTTGGTTGATGTTGGAGTTTATTGTTTTGATTGTACAAATAATCATTTCGACATTCACTTTGGCTATTTCGATGAGGGAGAAACCTGTTTGGCCTATGAGGGTATGGATATCTGGTTATGATATTGGATGTGTTCTTAACCTGCTTATGGTTTATGGCCGCTACCGACAAATTTATCTTATTCAAGGAGATGCCCTTAGTCTTTCTGATATGGAACAGCAGAGAAACAATGAAGAAACAAGGACATCACTGGAGTTTTTCTTTGCCATATGGTTTGTGATGGGAAATGTTTGGTTTTTCGACTCACGTTTTGGTTCATTTCAACAAGCTCCAAAACTTCATGTCCTTTGCATCACATTGCTTACTTGGAATGCAATCTGCTACTCTTTCCCTTTCCTACTTTTTCTGCTGTTATGCTGTTGTGTGCCATTGATCAGCACCCTCCTTGGTTACAACATGAACATGGCCTCTTCTAATAAAGGTGCAACTGATGAACAAATTTCACAACTTCCAAGTTGGATACATAAAGAACCTCATACCAAGTTAGAGCCTGCCGATGACTCCGAAAGCATTGAAAATTTTATCAATGAAGATCCTGAATGTTGCATCTGCTTAGCAAAGTACAAAGACAAAGAAGAACTTAGACAATTGCCATGTTCTCATGTGTTCCACCTAAAATGTGTGGACCAGTGGCTAAAAATTATATCTTGCTGCCCACTTTGCAAACAAGGATTAGAGAGGTAG 987 0.3891 MNSRCLLNSNSIVQSSSSYAEREDRDGSSRNRPQLVSSPPTFSVRMAMRISRSRWFTLLRRVFHYQNGSRSNLGSNPFNSSTWLMLEFIVLIVQIIISTFTLAISMREKPVWPMRVWISGYDIGCVLNLLMVYGRYRQIYLIQGDALSLSDMEQQRNNEETRTSLEFFFAIWFVMGNVWFFDSRFGSFQQAPKLHVLCITLLTWNAICYSFPFLLFLLLCCCVPLISTLLGYNMNMASSNKGATDEQISQLPSWIHKEPHTKLEPADDSESIENFINEDPECCICLAKYKDKEELRQLPCSHVFHLKCVDQWLKIISCCPLCKQGLER 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05235 328 ProSiteProfiles Zinc finger RING-type profile. 282 323 IPR001841 -
Trre9g05235 328 SUPERFAMILY RING/U-box 274 326 - -
Trre9g05235 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 327 IPR013083 -
Trre9g05235 328 SMART ring_2 282 322 IPR001841 -
Trre9g05235 328 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 17 325 - -
Trre9g05235 328 Pfam RING-like zinc finger 281 309 IPR001841 -
Trre9g05235 328 MobiDBLite consensus disorder prediction 15 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05235 Trre-Chr9 57400712 57402895 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05235 42 326 C3H Transcription Factor Family AT4G26580 65.203 4.02e-133 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05235 - - gmx:100813670 528.865