Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05234 ATGAATTCTAGGTGTTTGTTGAATTCCAACAGCATAGTTCAATCTTCTTCAAGTTATGCAGAAAGAGAAGATAGAGATGGTAGTTCGCGAAATAGACCTCAACTTGTCTCGTCGCCGCCAACGTTTTCGGTTCGGATGGCGATGAGAATATCAAGATCAAGATGGTTTACTTTGTTAAGAAGAGTTTTTCATTATCAGAATGGATCAAGGTCTAACCTTGGCTCTAATCCTTTCAATTCTAGTACTTGGTTGATGTTGGAGTTTATTGTTTTGATTGTACAAATAATCATTTCGACATTCACTTTGGCTATTTCGATGAGGGAGAAACCTGTTTGGCCTATGAGGGTATGGATATCTGGTTATGATATTGGATGTGTTCTTAACCTGCTTATGGTTTATGGCCGCTACCGACAAATTTATCTTATTCAAGGAGATGCCCTTAGTCTTTCTGATATGGAACAGCAGAGAAACAATGAAGAAACAAGGATGCCACACTTGATGAATAAATGCAGGACATCACTGGAGTTTTTCTTTGCCATATGGTTTGTGATGGGAAATGTTTGGTTTTTCGACTCACGTTTTGGTTCATTTCAACAAGCTCCAAAACTTCATGTCCTTTGCATCACATTGCTTACTTGGAATGCAATCTGCTACTCTTTCCCTTTCCTACTTTTTCTGCTGTTATGCTGTTGTGTGCCATTGATCAGCACCCTCCTTGGTTACAACATGAACATGGCCTCTTCTAATAAAGGTGCAACTGATGAACAAATTTCACAACTTCCAAGTTGGATACATAAAGAACCTCATACCAAGTTAGAGCCTGCCGATGACTCCGAAAGCATTGAAAATTTTATCAATGAAGATCCTGAATGTTGCATCTGCTTAGCAAAGTACAAAGACAAAGAAGAACTTAGACAATTGCCATGTTCTCATGTGTTCCACCTAAAATGTGTGGACCAGTGGCTAAAAATTATATCTTGCTGCCCACTTTGCAAACAAGGATTAGAGAGGTAG 1014 0.3895 MNSRCLLNSNSIVQSSSSYAEREDRDGSSRNRPQLVSSPPTFSVRMAMRISRSRWFTLLRRVFHYQNGSRSNLGSNPFNSSTWLMLEFIVLIVQIIISTFTLAISMREKPVWPMRVWISGYDIGCVLNLLMVYGRYRQIYLIQGDALSLSDMEQQRNNEETRMPHLMNKCRTSLEFFFAIWFVMGNVWFFDSRFGSFQQAPKLHVLCITLLTWNAICYSFPFLLFLLLCCCVPLISTLLGYNMNMASSNKGATDEQISQLPSWIHKEPHTKLEPADDSESIENFINEDPECCICLAKYKDKEELRQLPCSHVFHLKCVDQWLKIISCCPLCKQGLER 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05234 337 Pfam RING-like zinc finger 290 318 IPR001841 -
Trre9g05234 337 Coils Coil 149 169 - -
Trre9g05234 337 SUPERFAMILY RING/U-box 283 335 - -
Trre9g05234 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 336 IPR013083 -
Trre9g05234 337 ProSiteProfiles Zinc finger RING-type profile. 291 332 IPR001841 -
Trre9g05234 337 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 17 334 - -
Trre9g05234 337 SMART ring_2 291 331 IPR001841 -
Trre9g05234 337 MobiDBLite consensus disorder prediction 15 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05234 Trre-Chr9 57400712 57402895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05234 42 335 C3H Transcription Factor Family AT4G26580 66.892 2.28e-140 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05234 - - gmx:100813670 554.288