Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05233 ATGGAAAATATGAGAGAAAATGAAATTGAGGACAATATGTCAATGTCACCTCCGTCCGTTGGTTCCATGCAGATTGCAGGAAACAATGGTTTTGGTCACAGCATGGAGTTCATGTCTCAGGCCTACGCTCTTAATAGGTACTCAGAGATCGATATACGAGTTCAGGATTCAAGTTTCAACCAAGATCCCCCTCTTCCTGTATATCTCAAGTTTGAAGATGTTGAGTTCAAAGTGAGAAATAGCCAAACAGTTTCCAAAAACCCTGTGAAAACAATGGTGTCAAAGGTATCCACACAAAACAATGCGGACGAAAGAAACAAATACAAGAAAATTTTAAAGGGTATCACAGGAAGCATTGGCCCTGGCGAAATTCTAGCTTTGATGGGTCCTTCTGGTAGTGGAAAGACAACATTGTTGAGTGTTATAGGAGGAAGAGTAAATAATGATAATGTAAAAGGAAAAATAACTTACAATGATGTTCCATATAGTCCTGTTCTCAAGAGGAGGATTGGATTTGTACCACAAGAGGATGTGCTTTTTCCACAACTTACCGTCGAAGAAACATTAATCTTCTCTGCATTCTTAAGGCTACCAACCAACATGAGCAAGCAACAAAAATATGCAAGAGTTGAGAACACTATCAAGGATCTAGGCCTGGAAAGATGCCGCCACACGAAAATAGCTGGAGGCATATCAGGAGGAGAAAGGAAAAGAACCAGCATTGGCTATGAAATTCTTGTTGATCCTTCACTGCTGCTACTTGATGAGCCAACTTCAGGCCTTGATTCCACCTCAGCAAACAAACTCCTTCTCACTCTTCAAGGACTCGCCAAAGCTGGAAGAACTATAATCACAACAATTCACCAGCCATCAAGCAGAATCTTTCACATGTTTAGCAAACTTCTTCTGATATCAGAAGGCTCTCCTGTTTTTTATGGGAAGGCTAAAGACACAATGGAGTACTTTTCATCCTTGAGGTTCGTCCCGCAAATACCGATGAATCCAGCTGAATTCTTGCTTGACTTGGCTACTGGACAAGTGAATGATATAAGTATTCCACAAGATATTTTCAAAGATCAAGAATTTACTGACCCTTCAGCAGCTGTTATTAAGTATGTACAACTCAAGTATAAAGAAATACTTGAGCCAAAAGAAAAAGAGAATCATAAAAGAGCAAACACACCAAAACATCTTCAACTAGCAATTCAGGTTAAAAAGGAATGGACATTAGGTTGGTTAGACCAATTCGTTATTCTTTATAAGAGATCATTCAAAGCAAGATGCATGGAATATTTTGATATATTAAGACTTGTTCAAGCGCTTGGAATTGCACTTTTGTTAGGACTACTTTGGTGGAAATCTTCGATCAATACAGAAGCTGAACTCCGAGATCAGGTTGGTTTAATGTTCTATATTTGTATATTTTGGACATCTACATGTATTTTCGGAGCGGTCTATGTATTTCCATTCGAGAAGGTTTACTTAAGAAAAGAAAGGAAAGCAGATATGTATAGACTAAGTGTATACTATGCAAGTAGCACTCTATGTGACATGATGGCACATGTTATGTATCCTACTATTTTCATGCTCATTGTGTACTTCATGGCTGGATTTAAGAGCACCGCGGCTTGCTTCTTCCTTACGTTATTCGTAATTTTGCTAATAGCTATAACAAGTCAAGGGGCAGGTGAATTATTTGGAGCTGCAGTTATGAGTATTCAAAGAGCAGGAATGGTTGCTTCTTTGATACTTATGTTATTCCTTCTCACAGGTGGCTACTATGTTCAGCATATTCCAAAGTTCATGCAATGGTTAAAGTATATGTCATTCATGTACTATGGATTCAGGCTTCTACTAAAAGTGCAATATTCAGGAGACCAACTATATGAATGTGAAAGTTATGGAGGTTGTAGGCCACTTCAAACTTCACCTTCATTTGATACTGTAAATTTGAAAGGAGGTTTGAGTGAAGTTTGGGTTCTGCTAGCCATGGCTCTTTGCTTTAGGATATTGGCTTACTTTTGTCTCCGTAGAAGGATTGACAAATGA 2049 0.3851 MENMRENEIEDNMSMSPPSVGSMQIAGNNGFGHSMEFMSQAYALNRYSEIDIRVQDSSFNQDPPLPVYLKFEDVEFKVRNSQTVSKNPVKTMVSKVSTQNNADERNKYKKILKGITGSIGPGEILALMGPSGSGKTTLLSVIGGRVNNDNVKGKITYNDVPYSPVLKRRIGFVPQEDVLFPQLTVEETLIFSAFLRLPTNMSKQQKYARVENTIKDLGLERCRHTKIAGGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLLLTLQGLAKAGRTIITTIHQPSSRIFHMFSKLLLISEGSPVFYGKAKDTMEYFSSLRFVPQIPMNPAEFLLDLATGQVNDISIPQDIFKDQEFTDPSAAVIKYVQLKYKEILEPKEKENHKRANTPKHLQLAIQVKKEWTLGWLDQFVILYKRSFKARCMEYFDILRLVQALGIALLLGLLWWKSSINTEAELRDQVGLMFYICIFWTSTCIFGAVYVFPFEKVYLRKERKADMYRLSVYYASSTLCDMMAHVMYPTIFMLIVYFMAGFKSTAACFFLTLFVILLIAITSQGAGELFGAAVMSIQRAGMVASLILMLFLLTGGYYVQHIPKFMQWLKYMSFMYYGFRLLLKVQYSGDQLYECESYGGCRPLQTSPSFDTVNLKGGLSEVWVLLAMALCFRILAYFCLRRRIDK 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05233 682 CDD ABCG_EPDR 66 313 - -
Trre9g05233 682 Pfam ABC-2 type transporter 288 348 IPR043926 GO:0140359
Trre9g05233 682 Pfam ABC transporter 112 259 IPR003439 GO:0005524
Trre9g05233 682 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 55 672 - -
Trre9g05233 682 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 324 IPR027417 -
Trre9g05233 682 FunFam ABC transporter G family member 22 99 325 - -
Trre9g05233 682 Gene3D - 94 326 IPR027417 -
Trre9g05233 682 Pfam ABC-2 type transporter 415 623 IPR013525 GO:0016020|GO:0140359
Trre9g05233 682 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 96 331 IPR003439 GO:0005524
Trre9g05233 682 SMART AAA_5 121 308 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05233 Trre-Chr9 57393209 57396691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05233 110 292 Calmodulin-binding Proteins AT2G36910 29.851 4.81e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05233 K05681 - gmx:100815259 1129.01