Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05210 ATGAAAACAGTTCTTCCAAAAGGTGCAAAGATAACAAAAACAAGCAAGCAATGTATGGTGGAATGTGCAGCTGAATTCATTAGCTTTGTTACAAGTGAGGCCAAATATTACTGCCAATTGGATCAAAGAGACACAATTACTACTGAAGATTTGATAGATGCTATGCGAAAAGTGGGTCTCAACGTCATCGCTGATTATTCCTTCCGCTACTACCAACACTATCTTAACCATGATCATGCTTGTGCGAGCGGTCAATACGCTCCTCCACCATGTTCGCTGCCACAAGATGTTCATACTCGTGTTAGCGGCCAATACTATTGTCCTCCTCCACATCCACTACCATCACAAGATGTTCAAGCTTGTGTTAGTCGCCAATATTATGCTCCTCCTCCTCCACCACCACTGCCATTACAAGATGTCTCAGCTCGCAATTTTTCAATAGCTCCAAATTTCATGTTTCCGAACACAATAGGAACGGGTACATTTTTTGGAGGTGATTATCAAGAACTTCCACCACCACTGCTGCAACAAGATGTTCCAGCTCATGTTAGCAGCCAATATTATGCTCCTCCTCCTCCACCACCGCCATTGACATTACAGAATGTTCAAGCTCACAATTTTTCAATGGCTCCAAATTTCATGTTTCCGAACCCAATAGAAATGGGTACATTTTTTGGAGGTGATGATGGTGAAGAACTTCCTCCATCACTATTGCCACAAGATGTTCAAGCTTGTGTCAGTGGCCAATATGGGCCTCCTCCACCACCACCACCACAGGATGTTCAAGCTCGCTATTTTCCAATGGCTCCAAATTTCATGCTTTCGAATCCAATAGAAATGGGTTCGTTTTTTGGAGATGATGATGCTGAAGAACTTCCTCCACCATCATTGCCACAAGATGTTCAAGCTCTTGTCAGTGGCCAGTACACACCTTCTCCTCCACCACTGGATGTTCAAGCTCGTGATTTTCCAATGGCTCCAAATTTCGAGTTTCCGAACCCAATAGGAATGGGTGCATTTTTTGGAGATGGTCATGGTGAAGAACTTCCTCCATCACTATTGCCACAAGATGTTCAAGCTTGTGTCAGTGGCCAATATGGGCCTCCTCCACCACCACCACCACAGGATGTTCAAGCTCGCTATTTTCCAATGGCTCCAAATTTCATGCTTTCGAATCCAATAGAAATGGGTTCGTTTTTTGGAGATGATGATGCTGAAGAACTTCCTCCACCATCATTGCCACAAGATGTTCAAGCTCTTGTCAGTGGCCAGTACACACCTTCTCCTCCACCACTGGATGTTCAAGCTCGTGATTTTCCAATGGCTCCAAATTTCGAGTTTCCGAACCCAATAGGAATGGGTGCATTTTTTGGAGATGGTCATGGTGAAGAATTTCCTCCACCACCACCACTACCACAAGATGTTCAAGCTCGTACCCAGCAGAAATGGGTTCACTTTTTGGAGATGGTGAAGAACTTGGTGGCGGCTGGTGGTGATGGAGATGGTAATTCAGATGATGAAGGCTTTGATCTTATTCCTTTTCTTAATAGTGATGACTGA 1560 0.4423 MKTVLPKGAKITKTSKQCMVECAAEFISFVTSEAKYYCQLDQRDTITTEDLIDAMRKVGLNVIADYSFRYYQHYLNHDHACASGQYAPPPCSLPQDVHTRVSGQYYCPPPHPLPSQDVQACVSRQYYAPPPPPPLPLQDVSARNFSIAPNFMFPNTIGTGTFFGGDYQELPPPLLQQDVPAHVSSQYYAPPPPPPPLTLQNVQAHNFSMAPNFMFPNPIEMGTFFGGDDGEELPPSLLPQDVQACVSGQYGPPPPPPPQDVQARYFPMAPNFMLSNPIEMGSFFGDDDAEELPPPSLPQDVQALVSGQYTPSPPPLDVQARDFPMAPNFEFPNPIGMGAFFGDGHGEELPPSLLPQDVQACVSGQYGPPPPPPPQDVQARYFPMAPNFMLSNPIEMGSFFGDDDAEELPPPSLPQDVQALVSGQYTPSPPPLDVQARDFPMAPNFEFPNPIGMGAFFGDGHGEEFPPPPPLPQDVQARTQQKWVHFLEMVKNLVAAGGDGDGNSDDEGFDLIPFLNSDD 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05210 519 SUPERFAMILY Histone-fold 1 74 IPR009072 GO:0046982
Trre9g05210 519 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 74 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trre9g05210 519 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 55 IPR003958 -
Trre9g05210 519 Gene3D Histone, subunit A 1 80 IPR009072 GO:0046982
Trre9g05210 519 MobiDBLite consensus disorder prediction 495 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05210 Trre-Chr9 57192532 57194194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05210 1 84 CCAAT-HAP3 Transcription Factor Family AT5G47670 39.773 1.70e-14 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre9g05210 CBFD_NFYB_HMF 1e-10 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05210 K08065 - tpra:123920747 498.819