Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05197 ATGGCCAACAATGATAAAAATGAGCCCTTGCTATCGGGACCAGAAGACACTGCAGCTCAAAAGGCTAAAGGACGGTTAAATCAAAGAAGGTTCCTCCGTTCTCGAAGTGCTCCTCATACAGATCATGCTCCTCTGGTGACAAAAGACAACGAATCAATTCCTCTTTCTGAGTCCATATTTGGGAATCTACATCCAAGCTTTAAAAATGTGTTGATAACCCTTACGGTCTATTTAGGTGTAGGAACTTTAATCTTCTACCTTGTCAGGAACCAAATCAAGGGAATGAAAACAGATAGATTCCTTGATGCTTTATACTTTACAATTGTGACAATGACAACTGTTGGATATGGTGACCTTGTTCCGAATAGTGACCTTACAAAACTACTCGCGTGTGCTTTTGTTTTCTCCGGAATGGCGTTGATGGGATTAATCCTAAGTAAAGCAGCAGATTACTTGGTTGAGAAGCAAGAAGTTTTGCTAATTAAAGCCATGCACATGCACCAAAAAGTTGGTCCAAGTGAAATTTTAAAGGAGCTTGAGATCAATAAAACAAGATACAAATTTATTCTAGTCCTTTTCCTTCTTTTGATTCTCGTTATTGTGGGGACAACCTTTTTGGTTACTGTTGAGAAATTTGATTTTATTGATGCCTTGTATTGTGTTTGTTCAACAATTACAACTCTCGGTTATGGAGATAAAAGTTTCTCTACTCAAGCTGGAAGAATATTTGCAGTGTTTTGGATATTAACCGGTACTATTTGTTTAGCTCAGTTTTTCCTCTACATGGCTGAACTAAACACTGAAAGCAGACAAAAGGCAATTGTCAAGTGGGTTCTTACAAGGAAAATGACCAATGTTGATTTGGAAGCCGCAGATCTTGACGAGGATGGCACTGTTGGGGCTGCTGAATTTGTTATTTATAAGCTGAAAGAGATGGGGAAGATTACTCAAGAAGATATAACACTTGTGATGAAGGAGTTTGAAGAGCTTGATGTTGACCAGTCTGGTACACTGTCTAATTCGGATATAACACTTGCTCAATCATCTTAG 1050 0.3848 MANNDKNEPLLSGPEDTAAQKAKGRLNQRRFLRSRSAPHTDHAPLVTKDNESIPLSESIFGNLHPSFKNVLITLTVYLGVGTLIFYLVRNQIKGMKTDRFLDALYFTIVTMTTVGYGDLVPNSDLTKLLACAFVFSGMALMGLILSKAADYLVEKQEVLLIKAMHMHQKVGPSEILKELEINKTRYKFILVLFLLLILVIVGTTFLVTVEKFDFIDALYCVCSTITTLGYGDKSFSTQAGRIFAVFWILTGTICLAQFFLYMAELNTESRQKAIVKWVLTRKMTNVDLEAADLDEDGTVGAAEFVIYKLKEMGKITQEDITLVMKEFEELDVDQSGTLSNSDITLAQSS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05197 349 ProSitePatterns EF-hand calcium-binding domain. 331 343 IPR018247 -
Trre9g05197 349 Gene3D - 171 276 - -
Trre9g05197 349 SUPERFAMILY Voltage-gated potassium channels 69 166 - -
Trre9g05197 349 Gene3D - 64 158 - -
Trre9g05197 349 MobiDBLite consensus disorder prediction 1 33 - -
Trre9g05197 349 FunFam Calcium-activated outward-rectifying potassium channel 1 64 159 - -
Trre9g05197 349 FunFam Two-pore potassium channel 1 168 276 - -
Trre9g05197 349 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 72 321 IPR003280 GO:0005267|GO:0016020|GO:0071805
Trre9g05197 349 PRINTS Two pore domain K+ channel signature 223 251 IPR003280 GO:0005267|GO:0016020|GO:0071805
Trre9g05197 349 PRINTS Two pore domain K+ channel signature 297 306 IPR003280 GO:0005267|GO:0016020|GO:0071805
Trre9g05197 349 SUPERFAMILY Voltage-gated potassium channels 180 283 - -
Trre9g05197 349 Pfam Ion channel 73 153 IPR013099 -
Trre9g05197 349 Pfam Ion channel 195 265 IPR013099 -
Trre9g05197 349 SUPERFAMILY EF-hand 284 343 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05197 Trre-Chr9 57125354 57126745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05197 54 349 Ion Channels AT5G55630 66.216 2.05e-147 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05197 K05389 - gmx:100777388 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g05197 9 57125354 57126745 Trre9g05197 9 57125354 57126745 ECH