Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05190 ATGATGTTGTCTTGTAGAGTTGTTGTTGTTTTGTTTGTTTTGGTTTTTGTTATGATGATTGAGGTGGAATTAGCAGAATGTGGTAATGGGGGTGGTGTTAGGAATTATATTAGTTGGGAAGATTTGATGGTTGATGAACAAAGGTTTGTTTTTAAGAAGAATATTAATCATAATGAAGTTAGAGTTATTGTTGTTGATCAGAATGGAAATGGACATTCTAAAACTGTTCAAGGTGCAGTTGATTTGGTTCCTGATTGGAATCAACACAGAGTCAAAATCTACATTTTTCCAGGAATTTACAGAGAAAGAGTGTTTGTGCCAATCACAAAGCCTTATATATCATTTATAGGCAGAAGAAATGAAACAGCAGGTCCTGTAATTACATGGAACAGTAAATCATCAGATAAAGGTCCAAATGGTCAAGCATTAGGAACCTATGGTTCAGCAACTGTAGCAATTGATTCAGATTTTTTCTGTGCAACTGAGGTCACTTTTGAGAACACAGTGGTTGCATCAGCAGGTGGACAAGGAATGCAAGCAGTGGCACTAAGAGTAAACAGTGATAAAGCAATGTTCTATAGAGTTAAGATTAAAGGAACTCAAGACACTCTCTTGGACAACACAGGAACTCACTACTTCTACAGATGTATCATTCAAGGAAAAGTTGATTTCATCTTTGGCAGTGCAAAATCACTCTATGAGAAGTGTAGGCTTCAGTCAATAGCTGAGAACTATGGAGCAATTGCAGCACATCATAGGGATTCACCACTTCAAGATACAGGATTTTCATTTGTAGGATGCAGTATTAGAGGAACAGGAAATGTTTACCTTGGAAGAGCATGGGGTGACTACTCAAGAGTAATTTACTCAAATTGTAACATGGATGATATTATTAAACCTGAAGGCTGGTCAGAATGGAATCATCCAGAGAGAAGAAAGACTGCAGTGTTTGGTGAATACAATTGCCATGGAAAAGGAGCAGATAGAATAGAAAGGGTTCCTTGGTCAAAATCATTAAGCTATGGAGAAGCAAAGCCTTACTTGGACATTAACTTCATAAATGGAAATCAGTGGCTTAGACTATAG 1086 0.3711 MMLSCRVVVVLFVLVFVMMIEVELAECGNGGGVRNYISWEDLMVDEQRFVFKKNINHNEVRVIVVDQNGNGHSKTVQGAVDLVPDWNQHRVKIYIFPGIYRERVFVPITKPYISFIGRRNETAGPVITWNSKSSDKGPNGQALGTYGSATVAIDSDFFCATEVTFENTVVASAGGQGMQAVALRVNSDKAMFYRVKIKGTQDTLLDNTGTHYFYRCIIQGKVDFIFGSAKSLYEKCRLQSIAENYGAIAAHHRDSPLQDTGFSFVGCSIRGTGNVYLGRAWGDYSRVIYSNCNMDDIIKPEGWSEWNHPERRKTAVFGEYNCHGKGADRIERVPWSKSLSYGEAKPYLDINFINGNQWLRL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05190 361 SUPERFAMILY Pectin lyase-like 62 359 IPR011050 -
Trre9g05190 361 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 19 360 - -
Trre9g05190 361 FunFam Pectinesterase 58 361 - -
Trre9g05190 361 Gene3D - 57 361 IPR012334 -
Trre9g05190 361 Pfam Pectinesterase 63 356 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05190 Trre-Chr9 57076258 57078086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05190 8 313 Carbohydrate Esterase AT5G55590 57.669 6.21e-132 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05190 K01051 - gmx:100804220 541.962