Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05169 ATGTTGGAGCTTGTTTTTGTTTCAACTTCACTCATGAACCATGGAACTGATTTTCTTCTTAAACCCATTTTCCTTCATGGGTTATCTAGTTTACTTCATGTACTGTTGCTTGTGGCTGTTTTAGTTTCATGGGTTTGGAAAAAAATCACAACTTGTGTTGTGAATGAGCCTAAGGAGGAGAAGAAATTTAATAGTACTTTGTTTAAAGTAACAAAGTTTTGTTCTATTGGTTTTTCTTCTTTAAATATTGTTTTGTTTTTGTTTAATTATTTTTTCTGGTATAATAATGGTTGGTCGGAAGAAAAAGTTGTTACTCTTTTTGATTTAGCTTTAAAAACAGTTTCTTGGTTTGTTATTTGTGTTTGTTTCCACAAAGGGTTTTTGCTTTTCTTCAGTTCAGGTCAAAGAAAAAGAAGGTTTCCATTCTTATTTAGAGCTTGGTGTGTCTTCTATCTCTTTGTTTCATGTTATTGTTTTGTGGTTGACATTGTTGTTTTGTATGAAAATCACATTGAGTTAACTGCTCAATGCTTGGTTTCTGATGTAGTGTCTTTTTGTGTTGGTTTGTTCTTCTGTTATGTGGGGTATTTTGTGAGAAATGAGAGTGAAGAAGGTGATAGAACTATTCAAGAACCTCTTTTGAATGGTGATACACATGTTGGTTATGGTAATGGTAATGGTAATGGTAATGGTAATGGTAATGGTAATGGTAATGGTAATGGTAATGGTAATGGTAATGGTAATGGTAATGGTAATGGTAATGGTAATGGTAATGGTAATGGTAATGGTAATGTTAATCCCTTAGAGTTAAAAGAGACTAAAGGGAGTGACACTGTTACTCCTTTTTCAAATGCTGGAATTTTGAGCCTTCTCACTTTCACTTGGGTGGGACCTCTTATAGCATTTGGAAGTAAGAAAACCTTAGACCTTGAGGATATTCCTCAGCTAGATAGTGGAGATAGTGTGGTTGGAGCTTTTCCAACTTTTAGAGACAAACTTGAAGCTGATTGTGGTGCAATCAATAGAGTAACAACACTTAAGTTAGTTAAGTCATTGATAATCTCTGGGTGGAAAGAGATTCTTATAACTGCTTTTCTTGCATTGTTAAACACTTTTGCTTCTTATGTTGGTCCATATCTTATTGATTCTTTTGTTCAATATCTTGATGGAAGAAGGCTATATGAGAATCAAGGCTATGTGTTAGTTTCTGCATTTTTCATTGCAAAGATTGTAGAGTGCTTAACACAGAGGCATTGGTTCTTTAGGTTGCAGCAAATCGGACTTCGATTCCGAGCACTGCTTGTCACTATGATATATAACAAAGCCTTAACACTTTCATGTCAATCAAAACAGTGCCACACTTCTGGAGAAATAATCAATTTCATGACTGTTGATGCTGAAAGAGTCGGTGTTTTCAGTTGGTACATACATGATTTGTGGTTAGTAGTTTTGCAAGTTACATTGGCATTGGTCATTTTGTATAAAAATTTGGGGCTTGCTTCCGTTGCTGCTTTTGTTACTACTATCATTATCATGCTGGCAAATGTTCCCTTGGGATCATTGCAAGAGAAGTTTCAAAATAAGTTGATGGAGTCGAAGGATACTAGAATGAAAACCACATCTGAAATTTTAAGGAACATGAGGATTCTCAAACTACAAGGATGGGAAATGAAGTTTCTATCTAAAATAACTGAGCTTAGGGACGCCGAACAAGGGTGGTTGAAAAAATTTCTTTATACTTCAGCCTTGACTACATTTGTCTTTTGGGGTGCACCTACATTGGTATCAGTGGTTACTTTTGGTACTTGTATGCTTATAGGGATCCCACTTGAATCAGGGAAGATTCTGTCAGCACTTGCAACAATCAGGATTCTTCAAGAGCCTATTTATAATCTTCCAGATACAATTTCAATGATAGCACAAACTAAAGTTTCTCTCGATAGGATCGCTTCGTTCCTTCGTCTCGATGACTTGCAATCTGATGTAGTTGAAAAGCTTCCTCCGGGAAGTTCTGATACTGCGATTGAAGTGGTTGATGGGAATTTTTCTTGGGATTTATCTTCAACTAGTCCAACTTTGCAGAACATAAATCTGAAAGTTTTTCGTGGCATGAAGGTTGCTGTTTGTGGTACCGTTGGGTCTGGCAAGTCTACTTTACTTTCTTGTGTATTGGGAGAAGTACCAAAGATATCCGGTGTCCTTAAAGTTTGTGGTACAAAGGCTTATGTTGCTCAATCACCATGGATTCAAAGTGGCAAGATAGAGGACAATATATTGTTTGGTGAACACATGGTTAGGGAAAGGTATGAGAAGGTACTTGAAGCATGTTCCTTAAAGAAGGATCTTGAAATCTTGTCATTTGGTGATCAGACGGTTATAGGCGAACGTGGGATAAATTTGAGTGGTGGGCAGAAACAAAGAATACAAATTGCTCGCGCTCTTTACCAAGATGCTGATATCTATCTATTTGATGATCCTTTTAGTGCTGTGGATGCTCATACAGGATCTCACCTTTTCAAGGAATGCTTGATGGGCGTTTTAAGTTCAAAAACAGTTGTTTATGTTACTCATCAAGTGGAGTTCCTACCTACTGCTGACCTTATATTGGTCATGAAAGATGGAAAAATTACTCAAAGTGGAAAGTATGCCGATCTGCTCAACATTGGGACCGATTTTATGGAACTCATCGGTGCACACAGAGAAGCTTTGTCTACACTTGAATCATTCGATGGAGGAAAAACATCTAATGAAATAGGTACATTAGAAAAAGATGTAAATATCTCCGGCACTCATGAAGAGGTAAATAAAGATGATCAAAATGGTGATAAAGGAGAACCAAAAGGCCAACTTGTTCAAGAAGAAGAAAGGGAGAAAGGTAAAGTTGGATTTTCAGTCTATTGGAACTATATCACAACTGCATATGGAGGAATTGTTGTACCGTTCATATTATTGGCTCAGATTCTTTTCCAAGCTCTTCAAATTGGAAGCAACTATTGGATGGCTTGGGCAACTCCCATCTCAGCTGACGTGGAGGCACCCGTTGAAGGAACAACTCTTATTGAAGTCTACGTTGGTTTGGCCATTGGAAGTTCTTTATGCATTCTTTTTAGAGCATTGTTACTTGTTACAGTTGGTTATAAGACAGCCACTATACTCTTCAATAAAATGCACTTGTGCATTTTTCGCGCCCCTATGTCATTTTTTGATTCTACTCCAAGTGGACGAATCCTTAATAGGGCTTCAACAGACCAAAGTGCAGTGGATACTGACATTCCTTATCAAATTGGCTCATTTGCCTTCTCCTTGATCCAGCTTCTAGGAATTATAATAGTGATGTCTCAGGTGGCATGGCAAGTTTTCATCGTGTTTGTACCCGTGATAGCAGTTAGCATTTGGTATCAGCGATATTATTTACCATCAGCCCGTGAACTATCACGTTTAAGTGGAGTATGCAAAGCCCCGATCATTCAACACTTTGCCGAAACAATATCCGGTACTTCAACCATTAGAAGCTTCGATCAACAGTCAAGATTCCATGAAACAAATATGAAACTGACTGATGGGTATTCTCGGCCAAAGTTCAATATTGCTGCTGCTATGGAATGGCTATGTTTTCGCTTAGATATGTTGTCTTCCTTCACATTTGCCTTTTCGTTGATATTCTTGATATCGATTCCACCTGGAATCATAAATCCAGGCATTGCTGGTCTAGCGGTTACCTATGGTCTAAATTTAAACATGATACAAGCTTGGGTGATATGGAATCTTTGTAACTTAGAGAACAAAATTATATCGGTGGAAAGGATGCTTCAGTATACAACCATTCCTAGTGAGCCTCCCCTTGTTCTAGAAGAAGATAAAAGGCCAGATCCTTCTTGGCCCGCATATGGCGAGGTTGATATACGAAACTTGCAGGTTCGATATGCTCCACATCTTCCGCTCGTGTTGCGTGGCCTAACATGTACGTTTCGTGGAGGATTGAGAACAGGCATTGTTGGTAGAACAGGTAGCGGCAAATCAACTCTTATACAAACACTTTTCCGACTCGTTGAACCTACTGCTGGGGAAGTTATCATCGACAGCATCAACATCTCTTCAATTGGATTGCATGATTTGAGGTCTAGACTAAGCATAATTCCGCAGGATCCAACAATGTTTGAGGGGACTGTGAGAAGTAATCTGGACCCCCTGGAAGAGTACACTGATGAACAAATATGGGAGGCCTTGGATAAGTGTCAATTGGGAGATGAAGTTAGAAAGAAAGAAGGAAAGCTTGACTCTTCAGTTAGCGAGAATGGTGAGAATTGGAGTATGGGTCAGAGGCAGTTGGTTTGCCTTGGTAGGGTTCTGCTTAAGAAGAGCAAGATTTTGGTGCTAGATGAAGCCACTGCATCAGTTGATACAGCTACAGATAATTTGATTCAGCAAACTCTTAAGCAGCATTTCACCGACTCTACAGTCATTACCATTGCGCATCGAATAACTTCTGTTCTTGACAGTGATATGGTGCTACTTCTTAGTCAAGGACTTATTGAGGAGTATGACTCCCCAACCACACTGCTAGAGAATAAGTCATCATCTTTTTCTAAGCTTGTTGCAGAGTATACCATGAGATCCAACTCCAATTTGTAG 4632 0.3858 MLELVFVSTSLMNHGTDFLLKPIFLHGLSSLLHVLLLVAVLVSWVWKKITTCVVNEPKEEKKFNSTLFKVTKFCSIGFSSLNIVLFLFNYFFWYNNGWSEEKVVTLFDLALKTVSWFVICVCFHKGFLLFFSSGQRKRRFPFLFRAWCVFYLFVSCYCFVVDIVVLYENHIELTAQCLVSDVVSFCVGLFFCYVGYFVRNESEEGDRTIQEPLLNGDTHVGYGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNGNVNPLELKETKGSDTVTPFSNAGILSLLTFTWVGPLIAFGSKKTLDLEDIPQLDSGDSVVGAFPTFRDKLEADCGAINRVTTLKLVKSLIISGWKEILITAFLALLNTFASYVGPYLIDSFVQYLDGRRLYENQGYVLVSAFFIAKIVECLTQRHWFFRLQQIGLRFRALLVTMIYNKALTLSCQSKQCHTSGEIINFMTVDAERVGVFSWYIHDLWLVVLQVTLALVILYKNLGLASVAAFVTTIIIMLANVPLGSLQEKFQNKLMESKDTRMKTTSEILRNMRILKLQGWEMKFLSKITELRDAEQGWLKKFLYTSALTTFVFWGAPTLVSVVTFGTCMLIGIPLESGKILSALATIRILQEPIYNLPDTISMIAQTKVSLDRIASFLRLDDLQSDVVEKLPPGSSDTAIEVVDGNFSWDLSSTSPTLQNINLKVFRGMKVAVCGTVGSGKSTLLSCVLGEVPKISGVLKVCGTKAYVAQSPWIQSGKIEDNILFGEHMVRERYEKVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLMGVLSSKTVVYVTHQVEFLPTADLILVMKDGKITQSGKYADLLNIGTDFMELIGAHREALSTLESFDGGKTSNEIGTLEKDVNISGTHEEVNKDDQNGDKGEPKGQLVQEEEREKGKVGFSVYWNYITTAYGGIVVPFILLAQILFQALQIGSNYWMAWATPISADVEAPVEGTTLIEVYVGLAIGSSLCILFRALLLVTVGYKTATILFNKMHLCIFRAPMSFFDSTPSGRILNRASTDQSAVDTDIPYQIGSFAFSLIQLLGIIIVMSQVAWQVFIVFVPVIAVSIWYQRYYLPSARELSRLSGVCKAPIIQHFAETISGTSTIRSFDQQSRFHETNMKLTDGYSRPKFNIAAAMEWLCFRLDMLSSFTFAFSLIFLISIPPGIINPGIAGLAVTYGLNLNMIQAWVIWNLCNLENKIISVERMLQYTTIPSEPPLVLEEDKRPDPSWPAYGEVDIRNLQVRYAPHLPLVLRGLTCTFRGGLRTGIVGRTGSGKSTLIQTLFRLVEPTAGEVIIDSINISSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSSVSENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNLIQQTLKQHFTDSTVITIAHRITSVLDSDMVLLLSQGLIEEYDSPTTLLENKSSSFSKLVAEYTMRSNSNL 1543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05169 1543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 672 897 IPR027417 -
Trre9g05169 1543 SUPERFAMILY ABC transporter transmembrane region 352 654 IPR036640 GO:0005524|GO:0016020
Trre9g05169 1543 CDD ABCC_MRP_domain2 1297 1517 - -
Trre9g05169 1543 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 981 1261 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre9g05169 1543 Gene3D - 657 909 IPR027417 -
Trre9g05169 1543 Pfam ABC transporter 693 827 IPR003439 GO:0005524
Trre9g05169 1543 Pfam ABC transporter 1317 1464 IPR003439 GO:0005524
Trre9g05169 1543 FunFam ABC transporter C family member 10 344 657 - -
Trre9g05169 1543 SMART AAA_5 1325 1517 IPR003593 GO:0016887
Trre9g05169 1543 SMART AAA_5 702 875 IPR003593 GO:0016887
Trre9g05169 1543 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 282 1534 - -
Trre9g05169 1543 MobiDBLite consensus disorder prediction 915 955 - -
Trre9g05169 1543 Gene3D - 1281 1535 IPR027417 -
Trre9g05169 1543 CDD ABC_6TM_ABCC_D2 979 1273 IPR044726 GO:0140359
Trre9g05169 1543 SUPERFAMILY ABC transporter transmembrane region 981 1280 IPR036640 GO:0005524|GO:0016020
Trre9g05169 1543 ProSitePatterns ABC transporters family signature. 800 814 IPR017871 GO:0005524|GO:0016887
Trre9g05169 1543 MobiDBLite consensus disorder prediction 224 271 - -
Trre9g05169 1543 Pfam ABC transporter transmembrane region 981 1223 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre9g05169 1543 Pfam ABC transporter transmembrane region 361 627 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre9g05169 1543 CDD ABCC_MRP_domain1 675 875 - -
Trre9g05169 1543 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 675 898 IPR003439 GO:0005524
Trre9g05169 1543 Gene3D ABC transporter type 1, transmembrane domain 340 656 IPR036640 GO:0005524|GO:0016020
Trre9g05169 1543 Gene3D ABC transporter type 1, transmembrane domain 942 1279 IPR036640 GO:0005524|GO:0016020
Trre9g05169 1543 FunFam ABC transporter C family member 3 1282 1534 - -
Trre9g05169 1543 MobiDBLite consensus disorder prediction 926 955 - -
Trre9g05169 1543 FunFam ABC transporter C family member 5 942 1279 - -
Trre9g05169 1543 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1301 1533 IPR003439 GO:0005524
Trre9g05169 1543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1291 1525 IPR027417 -
Trre9g05169 1543 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 361 641 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre9g05169 1543 CDD ABC_6TM_ABCC_D1 362 649 IPR044746 GO:0140359
Trre9g05169 1543 FunFam ABC transporter C family member 5 660 907 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05169 Trre-Chr9 56959386 56965651 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05169 675 904 Calmodulin-binding Proteins AT2G36910 30.435 2.16e-21 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05169 - K05666 gmx:100811245 2412.11