Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05165 ATGTTGGAGCTGGTTTTTGTTTCAACTTCACTCATGAACCATGGAACTAATTTTCTTCTTAAACCCATTTTCCTTCATGGGTTATCTAGTTTACTTCATGTATTGTTTCTTGTGGATGTTTTAGTCGCATGGGTTTGGAGTAAAATCACAACTTATGTTGAGAATGAGTCTAAAGAGAAGAAACTTAATAGTACTTTGTTTAAAGTGACAAAGTTTTGTTCTATTGGTTTTTCTTCTTTCAATTTTGTTTTGTTTTTGTTTAATTATTTTTACTGGTGTACTAATGGTTGGCCAGAAGAAAAAGTTGTCACCCTTTTTGATTTAGCTTTAAAAACAGTTTCTTGGTTTGTTATTTGTGTTTGTTTCAACAAAGGGTTCTTGTTTTTCTTCAGTTCAGGTCAAAGAAAAAGAAGGTTTCCATTCTTTTTTAGAGCTTGGTGTGTCTTCTATCTATTTGTTTCATGTTATAGTTTTGTTGTTGACATTGTTGTATTGTATGAAAATCACATTGAGTTAACTGCTCAATGCTTGGTTTCTGATGTAGTGTCTTTTTGTGTTGGTTTGTTCTTTTGTTATGTGGGGTATTTTGTGAAAAATGAGAGTGAAGGTGATAAAACTATTCAAGAACCTCTTTTGAATGGTGATACACATGTTGGTAATGGTAATGTTAATCCCTTGGAGTTAAAAGAGACTAAAGGGAGTGACACCGTTACTCCCTTTTCAAATGCTGGAATTTTGAGTCTTCTCACTTTCACTTGGGTGGGTCCTCTTATAGCATTTGGCAATAAGAAAACCTTAGACCTTGAGGATATTCCTCAGCTAGATAGTGGAGATAGTGTGGTTGGAGCTTTTCCAACTTTCAGAGATAAACTTGAAGCTGATTGTGGTGCAGTCAATAGAGTAACAACACTTAAGTTGGTTAAGTCATTGATAATCTCTGGGTGGAGAGAGATTCTAATCACTGCTTTTCTTATATTGTTAAAAACGTTTGCTTCTTATGTTGGTCCTTATCTTATTGATTCTTTTGTTCAGTATCTTGATGGACGAAGGCTATATGAGAATCAAGGCTATGTGTTGGTTTCTGCATTTTTCATTGCAAAGATTGTAGAGTGCTTTACACAGAGGCATCGGTTCTTTAGGGTGCAGAAAATCGGACTTCGATTCCGAGCACTGCTTGTCACTATGATATATAACAAAGCCTTAACACTTTCATGTCAATCAAAACAATGCCACACTTCTGGAGAAATAATCAATTTCATGACTGTTGATGCTGAAAGAGTCGGTGCTTTCAGTTGGTACATACATGATTTGTGGTTAGTAGTTTTGCAAGTTACATTGGCATTGTTCATTTTGTATAAAAATGTGGGGCTTGCTTCCATTGCTGCTTTTGTTACTACTATCATTATTATGTTGGCAAATGTTCCCTTGGGATCATTGCAAGAGAAGTTTCAAAATAAGTTGATGGAGTCGAAGGATACTAGAATGAAAACCACATCTGAAATTTTGAGGAACATGAGGATCCTCAAACTACAAGGATGGGAAATGAAGTTTCTATCTAAAATAACCGAGCTTAGGGATGCCGAACAAGGGTGGTTGAAAAAGTTTCTTTATACTTCAGCCTTGACTACATTTGTCTTTTGGGGTGCACCTACATTGGTATCAGTGGTTACTTTTGGCACTTGTATGCTTATAGGGATCCCACTTGAATCAGGGAAGATTCTGTCAGCACTTGCAACAATCAGGATTCTTCAAGAGCCTATTTATAATCTTCCAGATACGATTTCAATGATAGCACAAACTAAAGTTTCTCTCGATAGGATCGCTTCGTTCCTTCGTCTCGATGACTTGCAATCCGATGTAGTTGAAAAGCTTCCTCCGGGAAGTTCTGATACTGCAATTGAAGTAGTTGATGGGAATTTTTCTTGGGATTTATCTTCAACTAGTCCAACTTTGCAGAACATAAATCTTAAAGTTTTTCATGGAATGAAGGTTGCTGTTTGTGGTACCGTTGGATCAGGCAAGTCTACTTTACTTTCTTGTGTATTGGGAGAAGTACCAAAGATATCCGGTGTCCTTAAGGTATGCGGCACAAAGGCTTATGTTGCTCAATCACCATGGATTCAAAGTGGCAAGATAGAGGACAATATATTGTTTGGTGAACACATGGTTAGGGAAAGGTATGAGAAGGTACTTGAAGCATGTTCCTTAAAAAAGGATCTTGAAATCTTGTCATTTGGTGACCAGACGATTATAGGCGAACGTGGGATAAATTTGAGTGGTGGACAGAAACAAAGAATACAAATTGCTCGCGCTCTTTACCAAGATGCTGATATCTATCTATTTGATGATCCTTTTAGTGCTGTGGATGCTCATACAGGATCTCACCTTTTCAAGGAATGCTTGCTTCGTGTTTTAAGTTCAAAAACAGTTGTTTATGTTACTCATCAAGTGGAGTTCTTACCTACTGCTGACCTTATATTGGTCATGAAAGATGGAAATATTACTCAAAGTGGAAAGTATGCCGATCTGCTCAACATTGGGACTGATTTTATGGAACTCATCGGCGCACACAGAGAAGCTTTGTCTACACTTGAATCATTTGATGGAGGAAAAACATCTAATGAAATAAGTGTATTAGAAAAAGATGTAAATATCTCTGGCGCTCATGAAGAGGTAAACAAAGATGAGCAAAATGTTGATAAAGGAGAACCAAAAGGCCAACTTGTTCAAGAAGAAAAACGGGAGAAAGGTAAAGTTGGATTTTCAGTCTATTGGAACTATATCACAACTGCATATGGAGGAGTTCTTGTACCATTCATATTATTAGCTCAGATTCTTTTCCAAGCTCTTCAAATTGGAAGCAACTATTGGATGGCTTGGGCAACTCCCATCTCAGCTGACATGGAGGCACCCGTTGAAGGAACAACTCTTATTGAAGTCTATGTTGCTTTGGCCATTGGAAGTTCTTTATGCATTCTTGTTAGAGTATTGTTACTTGTAACAGTTGGTTATAAGACAGCCACTATACTCTTCAATAAAATGCACTTGTGCATTTTTCGCGCCCCTATGTCTTTTTTTGATTCTACTCCAAGTGGACGAATCCTTAATAGGGCTTCCACCGACCAAAGTGCAGTGGATACTGACATTCCTAATCAAATTGGCTCATTTGCCTTCTACTTGATCCAGCTTCTAGGAATTATAACAGTGATGTCTCAGGTGGCATGGCAAGTTTTCATCGTATTTGTACCCGTGATAGCAGTTAGCATTTGGTATCAGCGATATTATTTACCATCAGCCCGTGAACTATCACGTTTAAGTGGAGTATGCAAAGCCCCGATCATTCAACACTTTGCCGAAACAATATCTGGTACTTCAACCATTAGAAGCTTCGATCTACAGTCAAGATTCCATGAAACAAATATGACACTGAATGATGGGTATTCTCGCCCAAAGTTCAATATTGCTGCTGCTATGGAATGGCTATGCTTCCGCTTAGATATGTTGTCTTCCTTCACATTTGCCTTTTCCTTGATATTCTTGATATCGATTCCACCGGGAATCATAAATCCAGGCATTGCTGGTCTAGCAGTTACCTATGGTCTAAATTTAAACACGATACAAGCTTGGGTGATATATAATCTTTGTAACTTAGAGAACAAAATTATATCGGTGGAAAGGATGCTTCAGTATACAACCATTCCTAGTGAGCCTCCCCTTGTTTTAGAAGAAGAAAAAAGGCCAGATCCTTCTTGGCCCGCATATGGCGAGGTGGATATACGAAACTTGCAGGTTCGATATGCTCCACATCTTCCGCTCGTGTTGTGTGGCCTAACATGTACGTTTCGTGGAGGATTGAGAACAGGCATTGTTGGTAGAACAGGTAGCGGCAAATCAACTCTTATACAAACACTTTTCCGACTCGTTGAACCTACTGCTGGGGAAGTTATCATCGACAGCATCAACATATCTACAATTGGATTGCATGATTTGAGGTCTAGACTAAGCATTATTCCTCAGGATCCAACAATGTTTGAGGGAACTGTGAGAAGTAATCTAGACCCCCTGGAAGAGTACACCGATGAACAAATATGGGAGGCCTTGGATAAGTGTCAACTGGGAGATGAAGTTAGAAAGAACGAAGGAAAGCTTGACTCTTCAGTTAGCGAGAATGGTGAGAATTGGAGTATGGGTCAGAGGCAGTTGGTTTGCCTTGGTAGGGTTCTGCTTAAGAAGAGCAAGATTTTGGTGCTTGATGAAGCCACTGCATCAGTTGATACAGCTACAGATAATTTGATTCAGCAAACTCTTAGGCAGCATTTCACCGACTCTACTGTCATTACCATTGCGCATCGAATAACTTCTGTTCTTGACAGTGATATGGTTCTACTTCTTAGTCAAGGACTTATTGAGGAGTATGACTCCCCAACCACACTGCTAGAGAATAAGTCATCATCTTTTTCTAAGCTTGTTGCAGAGTATACCTTGAGGTCCAACTCCAATTTGTAG 4506 0.3866 MLELVFVSTSLMNHGTNFLLKPIFLHGLSSLLHVLFLVDVLVAWVWSKITTYVENESKEKKLNSTLFKVTKFCSIGFSSFNFVLFLFNYFYWCTNGWPEEKVVTLFDLALKTVSWFVICVCFNKGFLFFFSSGQRKRRFPFFFRAWCVFYLFVSCYSFVVDIVVLYENHIELTAQCLVSDVVSFCVGLFFCYVGYFVKNESEGDKTIQEPLLNGDTHVGNGNVNPLELKETKGSDTVTPFSNAGILSLLTFTWVGPLIAFGNKKTLDLEDIPQLDSGDSVVGAFPTFRDKLEADCGAVNRVTTLKLVKSLIISGWREILITAFLILLKTFASYVGPYLIDSFVQYLDGRRLYENQGYVLVSAFFIAKIVECFTQRHRFFRVQKIGLRFRALLVTMIYNKALTLSCQSKQCHTSGEIINFMTVDAERVGAFSWYIHDLWLVVLQVTLALFILYKNVGLASIAAFVTTIIIMLANVPLGSLQEKFQNKLMESKDTRMKTTSEILRNMRILKLQGWEMKFLSKITELRDAEQGWLKKFLYTSALTTFVFWGAPTLVSVVTFGTCMLIGIPLESGKILSALATIRILQEPIYNLPDTISMIAQTKVSLDRIASFLRLDDLQSDVVEKLPPGSSDTAIEVVDGNFSWDLSSTSPTLQNINLKVFHGMKVAVCGTVGSGKSTLLSCVLGEVPKISGVLKVCGTKAYVAQSPWIQSGKIEDNILFGEHMVRERYEKVLEACSLKKDLEILSFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLRVLSSKTVVYVTHQVEFLPTADLILVMKDGNITQSGKYADLLNIGTDFMELIGAHREALSTLESFDGGKTSNEISVLEKDVNISGAHEEVNKDEQNVDKGEPKGQLVQEEKREKGKVGFSVYWNYITTAYGGVLVPFILLAQILFQALQIGSNYWMAWATPISADMEAPVEGTTLIEVYVALAIGSSLCILVRVLLLVTVGYKTATILFNKMHLCIFRAPMSFFDSTPSGRILNRASTDQSAVDTDIPNQIGSFAFYLIQLLGIITVMSQVAWQVFIVFVPVIAVSIWYQRYYLPSARELSRLSGVCKAPIIQHFAETISGTSTIRSFDLQSRFHETNMTLNDGYSRPKFNIAAAMEWLCFRLDMLSSFTFAFSLIFLISIPPGIINPGIAGLAVTYGLNLNTIQAWVIYNLCNLENKIISVERMLQYTTIPSEPPLVLEEEKRPDPSWPAYGEVDIRNLQVRYAPHLPLVLCGLTCTFRGGLRTGIVGRTGSGKSTLIQTLFRLVEPTAGEVIIDSINISTIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDKCQLGDEVRKNEGKLDSSVSENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNLIQQTLRQHFTDSTVITIAHRITSVLDSDMVLLLSQGLIEEYDSPTTLLENKSSSFSKLVAEYTLRSNSNL 1501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05165 1501 SUPERFAMILY ABC transporter transmembrane region 937 1238 IPR036640 GO:0005524|GO:0016020
Trre9g05165 1501 FunFam ABC transporter C family member 3 1240 1492 - -
Trre9g05165 1501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 630 855 IPR027417 -
Trre9g05165 1501 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1259 1491 IPR003439 GO:0005524
Trre9g05165 1501 CDD ABCC_MRP_domain2 1255 1475 - -
Trre9g05165 1501 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 240 1492 - -
Trre9g05165 1501 FunFam ABC transporter C family member 5 900 1237 - -
Trre9g05165 1501 ProSitePatterns ABC transporters family signature. 758 772 IPR017871 GO:0005524|GO:0016887
Trre9g05165 1501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1249 1483 IPR027417 -
Trre9g05165 1501 FunFam ABC transporter C family member 10 302 615 - -
Trre9g05165 1501 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 939 1219 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre9g05165 1501 Pfam ABC transporter 651 785 IPR003439 GO:0005524
Trre9g05165 1501 CDD ABC_6TM_ABCC_D2 937 1231 IPR044726 GO:0140359
Trre9g05165 1501 Gene3D - 1239 1493 IPR027417 -
Trre9g05165 1501 SUPERFAMILY ABC transporter transmembrane region 310 612 IPR036640 GO:0005524|GO:0016020
Trre9g05165 1501 SMART AAA_5 660 833 IPR003593 GO:0016887
Trre9g05165 1501 SMART AAA_5 1283 1475 IPR003593 GO:0016887
Trre9g05165 1501 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 633 856 IPR003439 GO:0005524
Trre9g05165 1501 Pfam ABC transporter transmembrane region 319 585 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre9g05165 1501 Pfam ABC transporter transmembrane region 939 1181 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre9g05165 1501 Gene3D ABC transporter type 1, transmembrane domain 900 1237 IPR036640 GO:0005524|GO:0016020
Trre9g05165 1501 Gene3D ABC transporter type 1, transmembrane domain 297 614 IPR036640 GO:0005524|GO:0016020
Trre9g05165 1501 CDD ABC_6TM_ABCC_D1 320 607 IPR044746 GO:0140359
Trre9g05165 1501 Gene3D - 615 868 IPR027417 -
Trre9g05165 1501 CDD ABCC_MRP_domain1 633 832 - -
Trre9g05165 1501 Pfam ABC transporter 1277 1422 IPR003439 GO:0005524
Trre9g05165 1501 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 319 599 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre9g05165 1501 FunFam ABC transporter C family member 5 618 865 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05165 Trre-Chr9 56947038 56953183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05165 633 878 Calmodulin-binding Proteins AT2G36910 30.112 1.36e-22 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05165 - K05666 gmx:100811245 2404.79