Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05146 ATGGCTACATTTTCATCTCTTTACCCTTACAATCCTATGCTCTTCGTTCCAACTCCTTCCTCAAATCATCCATTTGCTTCTTCGTTTTTCAAACCAACCAAATTCACTGTTCGTTCCTCTCATTCCAATCCCAAAATTCTCAAAACCAACAGAAAATCAATTTATGGAAAAACCATCTCCCCGTACGATTCCGATGAAGAAAGTGAAGAAATGGACGACGATGATGAAGATGACGATGATGATTGGTTCTCTGATGATGAGGAATTTGCTGAGCCTGCTGATCTTGATGCTAAAGCCAAGAGATTGAAGTCAAAGACACTTCCAGATAGACAACAAGAAAAGGAAAAGGGTGTGAGATCTCTTAACAATGGACAAAGCAATAGATTGCCCAAAAGTCGGAGAATAGCATCATTACAAGAAAATAACAGTGCAAAGTTTGGTAGAAATTCTAAGGAGAGAAGATATCCGGAGTTGTCTGAACTGATTGTTTTGGATGTGAATTGGTTACCACTTCTTGATTACTTAAGCACCTTTGGAATTAAGGAATCACAGTTTCTCCAAATGTATGAGAGGCACATGTCATCATTTCAAATTAATCTATATTCTGCACAAGAAAGGATTGATTACTTATTGAGTCTTGGGGTTAAACGTACAGATATAAGAAGAATCCTTTTGAGGCAACCACAAATTCTCGAATATACGGTGGAGAACAATTTGAAGACACGCGTTGCTTTCTTGATGGGTTTGGGCGTACCTAGTTCCAAATTAGGACAAATTATTACTTCTACTCCATCCATTTTCTCTTACAGTCTTGAGAACTCATTAAAACCAACGGTGAAATATTTAATTGAAGAAGTCGGCATCAAGGAAAAAGATTTGGGTAAAGTCATTCAACTAAGTCCTCAAATTCTTGTCCAACGTATTGACATTTCATGGAATACTCGATTTATGTTCCTTACTAAAGAGTTGGGTGCACCAAAGGAGAGCATTGTGAAGATGGTAACGAAACACCCTCAGCTTCTGCATTACAGCATTGATGATGGATTGCTGCCAAGAATAAATTTCTTACGGAGCATAGGAATGAAAAATGCAGACATCTTGAAAATCTTGACTAGCCTTACGCAGGTGCTATCTTTGTCCTTGGAGGCTAATCTAAAGCCGAAGTATTTGTACTTGGTAAATGAACTTCACAATGAGGTAAAATCCTTGACTAAATACCCGATGTATCTTAGCTTGTCTTTGGAGCAGAGAATCCGTCCTCGTCACACGTTCTTGGTTTCCCTGAAGAAAGCTCCAATAGGAGGACCATTTCCTCTTGGATCTCTAGTTCCAACTGATGAAGCCTTTTGTCAACAGTGGGCTGGAACTACTCTTGATAAATATTTGGCATTTCGCCAGAGATTATTGCTTAAAAAGTTTGCAGATAAATATGACAAAAATGTGAAAAGATAA 1452 0.3822 MATFSSLYPYNPMLFVPTPSSNHPFASSFFKPTKFTVRSSHSNPKILKTNRKSIYGKTISPYDSDEESEEMDDDDEDDDDDWFSDDEEFAEPADLDAKAKRLKSKTLPDRQQEKEKGVRSLNNGQSNRLPKSRRIASLQENNSAKFGRNSKERRYPELSELIVLDVNWLPLLDYLSTFGIKESQFLQMYERHMSSFQINLYSAQERIDYLLSLGVKRTDIRRILLRQPQILEYTVENNLKTRVAFLMGLGVPSSKLGQIITSTPSIFSYSLENSLKPTVKYLIEEVGIKEKDLGKVIQLSPQILVQRIDISWNTRFMFLTKELGAPKESIVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMKNADILKILTSLTQVLSLSLEANLKPKYLYLVNELHNEVKSLTKYPMYLSLSLEQRIRPRHTFLVSLKKAPIGGPFPLGSLVPTDEAFCQQWAGTTLDKYLAFRQRLLLKKFADKYDKNVKR 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05146 483 Gene3D Transcription termination factor 3, mitochondrial 229 468 IPR038538 -
Trre9g05146 483 MobiDBLite consensus disorder prediction 37 149 - -
Trre9g05146 483 Pfam mTERF 163 427 IPR003690 GO:0003690|GO:0006355
Trre9g05146 483 MobiDBLite consensus disorder prediction 37 57 - -
Trre9g05146 483 MobiDBLite consensus disorder prediction 93 117 - -
Trre9g05146 483 MobiDBLite consensus disorder prediction 118 145 - -
Trre9g05146 483 FunFam Transcription termination factor MTERF9, chloroplastic 232 468 - -
Trre9g05146 483 PANTHER CGI-12 PROTEIN-RELATED 170 452 IPR003690 GO:0003690|GO:0006355
Trre9g05146 483 SMART mt_12 257 289 IPR003690 GO:0003690|GO:0006355
Trre9g05146 483 SMART mt_12 400 431 IPR003690 GO:0003690|GO:0006355
Trre9g05146 483 SMART mt_12 294 326 IPR003690 GO:0003690|GO:0006355
Trre9g05146 483 SMART mt_12 331 362 IPR003690 GO:0003690|GO:0006355
Trre9g05146 483 SMART mt_12 367 399 IPR003690 GO:0003690|GO:0006355
Trre9g05146 483 SMART mt_12 186 216 IPR003690 GO:0003690|GO:0006355
Trre9g05146 483 SMART mt_12 221 252 IPR003690 GO:0003690|GO:0006355
Trre9g05146 483 MobiDBLite consensus disorder prediction 65 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05146 Trre-Chr9 56825237 56827640 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre9g05146 mTERF 5.2e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05146 K15032 - gmx:102660933 664.455