Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05139 ATGCAAACATCTTTTAAACGTGAAATGCCATATGATTCTGACATGTTCAACATCGAGTCTGTACAAAACCTAGACTCATATTGCTTCGTGAAAAATGAGAATCTTGAAAACTACTCATCCTCTGATAACAGTAGCCACTTAACCTACCCTTCATTTCAAGCTTTAGAACAATATTCCAATTTTGAATCTTCTAACAATAGTCCAGTCTCAAAGCTACAGCCAAACTCTTACACGTTCAATTCGCAAAACTCTCTTGAAATTATCAATGATTTGTTTGAGAACGAACTGTGTTCGACACATACTCAAGATGACTTGTTGCACAAAACGAGGGAGCTTGAAAATGTTATGCTAGGACATGATGCAGCAGATATTCTCGACATATATAATGATATGGTAATGATTCCAGAAGAATCGGAATCTGATCCACTTTTGTTAGAAGCAGAAAAGTGGAAGAAAATGATGGAGATGATATCAAGAGGGGATTTGAAAGAAATGCTTTTCACTTGTGCAAAAGCAATATCAGAAAATGATATAGAAACAACTGAATGGTTAATATCAGAATTGTCGAAAATGGTTTCGGTTTCAGGCAATCCAATCCAAAGATTAGGTGCATACATGTTGGAAGCTCTTGTTGCAAGAATAGCTTCTTCAGGAAGCATAATCTACAAATCATTGAGATGTAAAGAACCTAAACCTGCTACTAGTAAAGAACTCCTTTCGCACATGCACGTGCTTTACGAAATTTGTCCTTACCTCAAATTCGGATACATGTCAGCAAATGGAGTAATTGCTGAAGCTTTAAAGGATGAAAGTGAAGTTCATATAATTGATTTTCAGATTAATCAGGGAATTCAATGGATAAGTCTAATCCAAGCACTTGCTGGAAAACCTGGTGGACCACCGAAGATTAGAATAACTGGTTTCGATGATTCAACTTCAGCCTATGCTAGAGGAGGAGGGCTTGATATTGTTGGAGAAAGATTATCAAAACTTGCACAATCATATAATGTAGAATTAGAGTTTCATGCAGTAGGGGCTAATCCTACTGAGGTGAAACTTGAAGACCTTGAAATTCGTCGCGGTGAAGCTATTGCTGTGAATTTTGCTATGATGCTGCACCATTTACCAGATGAAAATGTACACGGTGGACAGAATCATCGCGACCGGTTGGTGAGATTGGTCAAATGCTTGTCTCCTAAGGTAGTAACTCTTGTTGAGCAAGAATCGAATACCAACGAGCTTCCATTCTTGCCACGTTTCGTTGAGACAATGAACTACTACTTGGCGGTTTTTGAATCAATTGATGTTTCTTTGCCAAGGGAGCACAGAGAAAGGATTAATGTGGAACAGCATTGTTTGGCTCGCGAAGTTGTTAACTTAGTAGCATGCGAAGGCGCAGAAAGAGTCGAACGTCACGAGGTTCTGAACAAGTGGAAATCATGTTTCACAATGGCTGGATTCACACCATATCCATTAAGCTCTTATATTAATGGTTCAATAAAGAATCTTCTAGAAAGTTACCAAGGAAAATACACTCTAGAAGATAAAGATGGTGCTCTTTATCTAGGTTGGATGAATCAAGCACTTATTACCTCTAGTGCTTGGAGGTGA 1611 0.3824 MQTSFKREMPYDSDMFNIESVQNLDSYCFVKNENLENYSSSDNSSHLTYPSFQALEQYSNFESSNNSPVSKLQPNSYTFNSQNSLEIINDLFENELCSTHTQDDLLHKTRELENVMLGHDAADILDIYNDMVMIPEESESDPLLLEAEKWKKMMEMISRGDLKEMLFTCAKAISENDIETTEWLISELSKMVSVSGNPIQRLGAYMLEALVARIASSGSIIYKSLRCKEPKPATSKELLSHMHVLYEICPYLKFGYMSANGVIAEALKDESEVHIIDFQINQGIQWISLIQALAGKPGGPPKIRITGFDDSTSAYARGGGLDIVGERLSKLAQSYNVELEFHAVGANPTEVKLEDLEIRRGEAIAVNFAMMLHHLPDENVHGGQNHRDRLVRLVKCLSPKVVTLVEQESNTNELPFLPRFVETMNYYLAVFESIDVSLPREHRERINVEQHCLAREVVNLVACEGAERVERHEVLNKWKSCFTMAGFTPYPLSSYINGSIKNLLESYQGKYTLEDKDGALYLGWMNQALITSSAWR 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05139 536 Pfam GRAS domain family 162 536 IPR005202 -
Trre9g05139 536 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 109 530 IPR005202 -
Trre9g05139 536 ProSiteProfiles GRAS family profile. 153 536 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05139 Trre-Chr9 56793257 56794867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05139 20 536 GRAS Transcription Factor Family AT1G50600 57.915 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre9g05139 GRAS 5.1e-131 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05139 - - cam:101502619 866.3