Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05136 ATGGACACTGCCACCACAAACTCCTCCGAAACTCACTGTAGTTCGGAGCTCAGACTCGACGGAGCACCCAATGATCCGAATCGAACTGGGTCGGGTCAAAATTCTATGGCAAGATACAAGCTGATGTCTCCGGCGAAGCTTCCGATCTCGAGGTCACCGTGTATCACAATTCCTCCGGGTTATAGTCCGACGTCGTTTTTGGAGTCCCCAGTTCTTCTTTCTAATATGAAGGTGGAGCCTTCACCGACTACAGGGTCCCTTATTCAAGCTTTACATTGCTCTATGACTTCTGCTGGTTCTCCTACATTTCCTGTAACTTCTGCATGCTTCAATACCAGCACTGTTAATGGCAGAAAATATAGTTTCTTTGAGTTTAAACCACCTGCTAGAAATATGGTTCCTGCAGACTTCAACAACAATGTAAGTGAACAATCTACTCAAGTAGAAGGTCAAGGAAAAGGTCAATCATTTCGATCCTCACCATTAAATGAAAATGAGAAAGCAGATCAATCTAATGAATTAAGCCTATCATCACCTGTTCAAATGGTTAGTTCTGTGGCTAATTCTCCTGTTGATGTCAATTCGGATGAACATAACCACAAAGGCAACACAGCTAATGGGCCTCAATCATCAAATGATGGATACAATTGGCGAAAGTATGGGCAAAAACATGTTAAAGGGAGTGAATTTCCACGTAGCTATTACAAATGTACGCATCCTAACTGTGAAGTGAAAAAACTTTTTGAACGCTCTCATGACGGTCAAATCACTGAGATAATTTATAAGGGAACACATGATCATCCTAAACCTCAACCAAGCAACCGATACTCTGCGGGTTCTGTTATGTCTGTGCAAGGAGATAGATCCGATAATAGGGCATCTTCTTTGGCTGGCCGAGATGACAAAGCATCCAATAGTCCTGAGCAATCAACTGTTGCAGCCAATGATCTTAGTCTAGATGGTGCTGGATTTCCGTCGACCAGAACAAACAATGAGATTGATGACGATGATCCTTTCTCAAAGCGAAGAAAAATGGAACTCGGAAACACTGACATCATTCCTGTAGTTAAGCCTATCCGAGAGCCACGGGTTGTTGTACAGACTATGAGTGAAATTGATATATTGGATGATGGATACCGTTGGCGTAAGTATGGGCAGAAGGTGGTGAGAGGAAATCCTAACCCAAGGAGTTATTACAAATGCACAAATGCCGGGTGCCCCGTTAGGAAACACGTGGAGAGAGCATCACATGATCCGAAAGCTGTAATAACAACATACGAGGGCAAACACAATCACGATGTACCTGCTGCGAAGAGTAGTAGCCATGACATAGCAGGATATGCAGCTTCAAAGATAAAGTTAGAAGAAAGTGATACTATTAGTCTTGACCTTGGGATGGGAATCACCTCTGCAGCTGAAAATAGATCAAACGGGCAAGGGAAAATGCTGCTCTCCGAATTCGGGAATAATAGTCAAACCCACACAAGCAATTCCAATTTCAAGTTTGTTCATACAACCTCAGGTCCAGTATACTATGGTGTTCTAAATAACGGTTCAAATCCGTTTGGTTCGAGAGAAAATAGGAATGATGGTTCGTCTATAAACCATTCGTCGTATCCTTACTCACAGAACATGGGAAGAATACTAATGGGACCATGA 1659 0.4274 MDTATTNSSETHCSSELRLDGAPNDPNRTGSGQNSMARYKLMSPAKLPISRSPCITIPPGYSPTSFLESPVLLSNMKVEPSPTTGSLIQALHCSMTSAGSPTFPVTSACFNTSTVNGRKYSFFEFKPPARNMVPADFNNNVSEQSTQVEGQGKGQSFRSSPLNENEKADQSNELSLSSPVQMVSSVANSPVDVNSDEHNHKGNTANGPQSSNDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPSNRYSAGSVMSVQGDRSDNRASSLAGRDDKASNSPEQSTVAANDLSLDGAGFPSTRTNNEIDDDDPFSKRRKMELGNTDIIPVVKPIREPRVVVQTMSEIDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAAKSSSHDIAGYAASKIKLEESDTISLDLGMGITSAAENRSNGQGKMLLSEFGNNSQTHTSNSNFKFVHTTSGPVYYGVLNNGSNPFGSRENRNDGSSINHSSYPYSQNMGRILMGP 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05136 552 MobiDBLite consensus disorder prediction 143 219 - -
Trre9g05136 552 MobiDBLite consensus disorder prediction 1 15 - -
Trre9g05136 552 ProSiteProfiles WRKY domain profile. 212 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g05136 552 Pfam WRKY DNA -binding domain 212 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g05136 552 Pfam WRKY DNA -binding domain 376 432 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g05136 552 MobiDBLite consensus disorder prediction 521 541 - -
Trre9g05136 552 SMART WRKY_cls 375 434 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g05136 552 SMART WRKY_cls 211 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g05136 552 MobiDBLite consensus disorder prediction 270 329 - -
Trre9g05136 552 ProSiteProfiles WRKY domain profile. 370 435 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g05136 552 SUPERFAMILY WRKY DNA-binding domain 367 435 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g05136 552 MobiDBLite consensus disorder prediction 1 36 - -
Trre9g05136 552 FunFam WRKY transcription factor 196 271 - -
Trre9g05136 552 MobiDBLite consensus disorder prediction 143 193 - -
Trre9g05136 552 MobiDBLite consensus disorder prediction 261 342 - -
Trre9g05136 552 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 69 482 IPR044810 GO:0003700
Trre9g05136 552 FunFam WRKY transcription factor 33 362 428 - -
Trre9g05136 552 Gene3D WRKY domain 360 436 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g05136 552 Gene3D WRKY domain 195 271 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g05136 552 MobiDBLite consensus disorder prediction 200 217 - -
Trre9g05136 552 SUPERFAMILY WRKY DNA-binding domain 210 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05136 Trre-Chr9 56783730 56787283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05136 42 552 WRKY Transcription Factor Family AT4G26640 55.576 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre9g05136 WRKY 1.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05136 - - gmx:100816583 855.514