Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05133 ATGATGCCAAGTGTTAACCCTGATTCATCCGACAAAGATTCGGAGGCATTCGAGGAAATGGATCCAACTGGTCGATATGGTAGATACAGCGAACTATTAGGATGTGGTGCCGTGAAGAAAGTGTACCGTGCATTCGATCAAGAAGAAGGAATAGAGGTAGCATGGAACCAAGTGAAGCTAAGGAACTTCTGTGATGACTCTGCTATGGTGAAAAGGCTTTACTCTGAAGTGAGGTTATTGAGAAGCTTATCAAACAAAAACATCATTGAACTTTATAGTGTTTGGAACAATGATCAAAAGAACACACTCAATTTCATCACCGAGGTTTGTACTAGTGGGAATTTGAGAGAGTATAGGAAGAAACATAGGCATGTTTCTATGAAGGCACTGAAGAAATGGTCAAGGCAGATTTTGAGAGGGCTGAATTATTTGCATACTCATGAGCCTTGCATCATTCATAGAGATCTGAATTGCAGCAATGTGTTTGTTAATGGGAATGTTGGCAAGGTTAAAATCGGTGACTTGGGTTTAGCAGCAATTGTTGGGACGAATCATGTTGCACACACAATGCTTGGTACACCGGAGTTTATGGCACCGGAATTATACGACGAAGACTACACAGAATTGGTGGACATATACTCATTTGGCATGTGCGTGTTAGAAATGGTTACAGTGGAAATTCCTTATAGCGAATGTGACAATGTTGCAAAGATTTACAAGAAAGTGTCTTCCGGTATAAGACCCGCTGCATTGAACAAGGTCAAAGATCCCGAGGTAAAGGACTTCATTGAGAGGTGTCTTGCTCAACCAAGGGCTCGACCTTCTGCTGCTGAGCTTCTCCAAGATCCTTTCTTTGATGAACTTGTCGGTGAAGATGATGACGATGATGACGAAAATGCTGATCAAGTTTGTTCATACTAA 921 0.4159 MMPSVNPDSSDKDSEAFEEMDPTGRYGRYSELLGCGAVKKVYRAFDQEEGIEVAWNQVKLRNFCDDSAMVKRLYSEVRLLRSLSNKNIIELYSVWNNDQKNTLNFITEVCTSGNLREYRKKHRHVSMKALKKWSRQILRGLNYLHTHEPCIIHRDLNCSNVFVNGNVGKVKIGDLGLAAIVGTNHVAHTMLGTPEFMAPELYDEDYTELVDIYSFGMCVLEMVTVEIPYSECDNVAKIYKKVSSGIRPAALNKVKDPEVKDFIERCLAQPRARPSAAELLQDPFFDELVGEDDDDDDENADQVCSY 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05133 306 MobiDBLite consensus disorder prediction 1 21 - -
Trre9g05133 306 CDD STKc_WNK 25 285 - -
Trre9g05133 306 Gene3D Transferase(Phosphotransferase) domain 1 110 290 - -
Trre9g05133 306 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g05133 306 FunFam Probable serine/threonine-protein kinase WNK1 11 108 - -
Trre9g05133 306 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 11 288 - -
Trre9g05133 306 MobiDBLite consensus disorder prediction 287 306 - -
Trre9g05133 306 Gene3D Phosphorylase Kinase; domain 1 10 108 - -
Trre9g05133 306 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g05133 306 FunFam probable serine/threonine-protein kinase WNK9 110 290 - -
Trre9g05133 306 SUPERFAMILY Protein kinase-like (PK-like) 21 286 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05133 Trre-Chr9 56763691 56765614 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05133 6 289 MAP Kinase Kinase Kinase AT5G55560 78.873 1.57e-177 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trre9g05133 Pkinase 3.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05133 K08867 - gmx:100816060 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g05133 9 56763691 56765614 Trre9g05133 9 56763691 56765614 ECH
Trre5g01198 5 8496333 8497885 Trre9g05133 9 56763691 56765614 PCT