Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05128 ATGGTAAAGAAATCTTCCAAATTAATAGAAGAGATTGAGGTAAAGAAAAACCATCTTGATTCTCCTATAAAAAAGCCTACAACTCATGAGGTGAAATTAAAAGGAGGAGATAATTGTAATTCAGAACTTGTGTTCTTTGTTGAAGATCATGAGAGGTTCAAACTTGAGGATCTATTAAGAGCTAAAGCTGATTTGAGAAGTGAAAATTTTTGGAGTAGTCTTTTCAAGGTATCTTGTGATGAATTTGGAGAAACATTGAGGAAGATAAGTAAAGTGAAACATCAGAATATTCTCCCCGTTGTCGGTTATCGTTCTACCAATGAAGAAAAACTTATCATTTACAAATATCAAAGCAATGGAAGTTTGCTCAATCTTTTAAATGATTATATAGCAAGAAGAAAAGATTTCCCATGGAAACTTCGTCTCAATATAGCATGCGGAATCGCAAGGGGATTAGCATTCATTTATAAGAAATTGGATGAAGGGGAGGCCAATATTATTCCTCATGGAAACATCAAGCTATCAAATATTCTTCTAAATGACAAAAATGAAGCACTAATAGGTGAAGTGTTTGAAAAGGAAGTTAGAGAAAATGATCATCAAGATGCATTTTCATTGTTGAATATTGCTCTCTTGTGTGTGTCGCGTTCTCAAGAAAATAGGCCAAATGTTGAAGAAATTTTGAACACAATTGAAGGTGTGATGAATGCACATGAACAACAACAACAGATGGAACTTTCTGCTTCAAAATGTTGTTCTAATGGAACCAATCAAGAATGTTGTTCACTTCATCAAATCATACCTGATACATGGGATTCTCCTGGATCAAATTATTGA 837 0.3357 MVKKSSKLIEEIEVKKNHLDSPIKKPTTHEVKLKGGDNCNSELVFFVEDHERFKLEDLLRAKADLRSENFWSSLFKVSCDEFGETLRKISKVKHQNILPVVGYRSTNEEKLIIYKYQSNGSLLNLLNDYIARRKDFPWKLRLNIACGIARGLAFIYKKLDEGEANIIPHGNIKLSNILLNDKNEALIGEVFEKEVRENDHQDAFSLLNIALLCVSRSQENRPNVEEILNTIEGVMNAHEQQQQMELSASKCCSNGTNQECCSLHQIIPDTWDSPGSNY 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05128 278 Gene3D Transferase(Phosphotransferase) domain 1 71 190 - -
Trre9g05128 278 Pfam Protein tyrosine and serine/threonine kinase 80 188 IPR001245 GO:0004672|GO:0006468
Trre9g05128 278 SMART tyrkin_6 53 231 IPR020635 GO:0004713|GO:0006468
Trre9g05128 278 SUPERFAMILY Protein kinase-like (PK-like) 81 239 IPR011009 -
Trre9g05128 278 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 30 187 IPR046959 -
Trre9g05128 278 ProSiteProfiles Protein kinase domain profile. 1 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05128 Trre-Chr9 56720405 56721899 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05128 41 228 Receptor kinase-like Gene Family AT1G50610 30.918 2.45e-24 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre9g05128 PK_Tyr_Ser-Thr 7.2e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05128 - - tpra:123920674 344.354