Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05120 ATGATATGTTCAGGAGGTGAGTTATTATCATCAGAGTCTCATTCTTTCTTTAGTTTCCTTAAACCTATTGATCAAAATAATGTACTTAACATTAGCAAGATATCATATCCATGTTTGATCAATGGTGTAACATGTAATTCAAATGCTACCAATATTGTAGAGATAAGGCTTGATAACATGAACCTTAGTGGCATATTTGATGCATATTCACTATGTAGACTCCAAAAGCTAAAAGTGGTATCTTGTGATGAATTTGGAGAAACATTGAGGAAGATAAGTAAAGTGAAACATCAGAATATTCTCCCCGTTGTCGGTTATCGTTCTACCAATGAAGAAAAACTTATCATTTACAAATATCAAAGCAATGGAAGTTTGCTCAATCTTTTAAATGATTATATAGCAAGAAGAAAAGATTTCCCATGGAAACTTCGTCTCAATATAGCATGCGGAATCGCAAGGGGATTAGCATTCATTTATAAGAAATTGGATGAAGGGGAGGCCAATATTATTCCTCATGGAAACATCAAGCTATCAAATATTCTTCTAAATGACAAAAATGAAGCACTAATAGGTGAAGTGTTTGAAAAGGAAGTTAGAGAAAATGATCATCAAGATGCATTTTCATTGTTGAATATTGCTCTCTTGTGTGTGTCGCGTTCTCAAGAAAATAGGCCAAATGTTGAAGAAATTTTGAACACAATTGAAGGTGTGATGAATGCACATGAACAACAACAACAGATGGAACTTTCTGCTTCAAAATGTTGTTCTAATGGAACCAATCAAGAATGTTGTTCACTTCATCAAATCATACCTGATACATGGGATTCTCCTGGATCAAATTATTGA 846 0.3345 MICSGGELLSSESHSFFSFLKPIDQNNVLNISKISYPCLINGVTCNSNATNIVEIRLDNMNLSGIFDAYSLCRLQKLKVVSCDEFGETLRKISKVKHQNILPVVGYRSTNEEKLIIYKYQSNGSLLNLLNDYIARRKDFPWKLRLNIACGIARGLAFIYKKLDEGEANIIPHGNIKLSNILLNDKNEALIGEVFEKEVRENDHQDAFSLLNIALLCVSRSQENRPNVEEILNTIEGVMNAHEQQQQMELSASKCCSNGTNQECCSLHQIIPDTWDSPGSNY 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05120 281 SUPERFAMILY Protein kinase-like (PK-like) 82 242 IPR011009 -
Trre9g05120 281 Gene3D Transferase(Phosphotransferase) domain 1 70 193 - -
Trre9g05120 281 Pfam Protein tyrosine and serine/threonine kinase 83 191 IPR001245 GO:0004672|GO:0006468
Trre9g05120 281 ProSiteProfiles Protein kinase domain profile. 17 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g05120 281 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 83 190 IPR046959 -
Trre9g05120 281 SMART tyrkin_6 74 234 IPR020635 GO:0004713|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05120 Trre-Chr9 56687442 56689520 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05120 73 231 Receptor kinase-like Gene Family AT1G50610 32.704 2.75e-20 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre9g05120 PK_Tyr_Ser-Thr 6.7e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05120 - - tpra:123920671 236.113