Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05117 ATGAAAAGAGATTTGGTTGTAGTACGAATTAGACCTACAAGTAACATTGGAATTGGAGATGAAGGTGTTAAGAAAGTTTCTTCTGATACCTTGTGTGTTGGAGATAGACAATTTAGATTTGATTCAATTTTTGACTCCAAAACAACCCAGGAAGATATTTTTCAATCGATCGGTGTTCCCTTGGTTAAAAATGCTTTAGCTGGTTACAACACTTCAATTCTGTCATATGGCCAGTCTGGAAGTGGAAAGACTTATACAATGATCTTCCAAATGTTGTTTTCTGAGCTTGAAAAAGAGCAGCGCATGTCTGAGGGGAAACAGTTCAACTATCAGTGTCGATGTTGTTTTCTTGAGATATACAGTGAACAAGTTGGGGATTTACTTGATCCAACCCAGCGGAACCTTGAGGATGACTCCAAAAATTCATTGTCCTTGGAGAATCTGAGTGAGGAATATGTTACTAGCTATGATGATGTGACGCAAATTCTGATTAAGGGCCTCTCGAGCAGAAAAGTTGGACCAACAACCTTGAATTCTAAGAGCTCTAGATCACACATCATTTTCACTTTAGTGATCGAGTCTTGGTGTAAGGAACTTCAACAAATGGACAGGAACAAAGTTGACGGCGCAGGAAGACAATGTCTAAGGGAAACCAAAAGTGTTAAGAAGTCTTTATCTCAACTTGGGCACTTAGTAGATGCTTTAACTAAAGAAACTTTCTCAGGAAAAGCAGAAGTTCCAAACAGAAACTCCTGTTTAACACGTTTATTACATGAATCACTCGGTGGAAATGCCAAACTCTCAGTAATCTGTTCCATCTACCCAGACATCAACTTACATATACGATCACTCTCTGTTGAAATTGACAGAAAAAGAGTGAGGGAAAGAGCAAACAAGAATAACTTTAAAGACATCTTTTAA 921 0.3811 MKRDLVVVRIRPTSNIGIGDEGVKKVSSDTLCVGDRQFRFDSIFDSKTTQEDIFQSIGVPLVKNALAGYNTSILSYGQSGSGKTYTMIFQMLFSELEKEQRMSEGKQFNYQCRCCFLEIYSEQVGDLLDPTQRNLEDDSKNSLSLENLSEEYVTSYDDVTQILIKGLSSRKVGPTTLNSKSSRSHIIFTLVIESWCKELQQMDRNKVDGAGRQCLRETKSVKKSLSQLGHLVDALTKETFSGKAEVPNRNSCLTRLLHESLGGNAKLSVICSIYPDINLHIRSLSVEIDRKRVRERANKNNFKDIF 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05117 306 Pfam Kinesin motor domain 33 277 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre9g05117 306 SMART kinesin_4 2 294 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre9g05117 306 ProSiteProfiles Kinesin motor domain profile. 3 296 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre9g05117 306 Gene3D Kinesin motor domain 2 286 IPR036961 -
Trre9g05117 306 PANTHER CENTROMERE PROTEIN E 5 276 IPR027640 GO:0003777|GO:0007018
Trre9g05117 306 PRINTS Kinesin heavy chain signature 68 89 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre9g05117 306 PRINTS Kinesin heavy chain signature 175 192 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre9g05117 306 PRINTS Kinesin heavy chain signature 203 221 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre9g05117 306 PRINTS Kinesin heavy chain signature 246 267 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre9g05117 306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 280 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05117 Trre-Chr9 56673379 56679706 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05117 36 275 Calmodulin-binding Proteins AT5G65930 34.074 5.49e-37 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05117 K10400 - gmx:100806960 413.69