Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05116 ATGAAAAGAGATTTGGTTGTAGTACGAATTAGACCTACAAGTAACATTGGAATTGGAGATGAAGGTGTTAAGAAAGTTTCTTCTGATACCTTGTGTGTTGGAGATAGACAATTTAGATTTGATTCAATTTTTGACTCCAAAACAACCCAGGAAGATATTTTTCAATCGATCGGTGTTCCCTTGGTTAAAAATGCTTTAGCTGGTTACAACACTTCAATTCTGTCATATGGCCAGTCTGGAAGTGGAAAGACTTATACAATGATCTTCCAAATGTTGTTTTCTGAGCTTGAAAAAGAGCAGCGCATGTCTGAGGGGAAACAGTTCAACTATCAGTGTCGATGTTGTTTTCTTGAGATATACAGTGAACAAGTTGGGGATTTACTTGATCCAACCCAGCGGAACCTTGAGGATGACTCCAAAAATTCATTGTCCTTGGAGAATCTGAGTGAGGAATATGTTACTAGCTATGATGATGTGACGCAAATTCTGATTAAGGGCCTCTCGAGCAGAAAAGTTGGACCAACAACCTTGAATTCTAAGAGCTCTAGATCACACATCATTTTCACTTTAGTGATCGAGTCTTGGTGTAAGGAACTTCAACAAATGGACAGGAACAAAGTTGACGGCGCAGGAAGACAATGTCTAAGGGAAACCAAAAGTGTTAAGAAGTCTTTATCTCAACTTGGGCACTTAGTAGATGCTTTAACTAAAGAAACTTTCTCAGGAAAAGCAGAAGTTCCAAACAGAAACTCCTGTTTAACACGTTTATTACATGAATCACTCGGTGGAAATGCCAAACTCTCAGTAATCTGTTCCATCTACCCAGACATCAAGGATGTCATCGGGGTAAATATTGAGCGGTAA 864 0.39 MKRDLVVVRIRPTSNIGIGDEGVKKVSSDTLCVGDRQFRFDSIFDSKTTQEDIFQSIGVPLVKNALAGYNTSILSYGQSGSGKTYTMIFQMLFSELEKEQRMSEGKQFNYQCRCCFLEIYSEQVGDLLDPTQRNLEDDSKNSLSLENLSEEYVTSYDDVTQILIKGLSSRKVGPTTLNSKSSRSHIIFTLVIESWCKELQQMDRNKVDGAGRQCLRETKSVKKSLSQLGHLVDALTKETFSGKAEVPNRNSCLTRLLHESLGGNAKLSVICSIYPDIKDVIGVNIER 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05116 287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 277 IPR027417 -
Trre9g05116 287 SMART kinesin_4 2 287 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre9g05116 287 Gene3D Kinesin motor domain 2 281 IPR036961 -
Trre9g05116 287 PANTHER CENTROMERE PROTEIN E 5 276 IPR027640 GO:0003777|GO:0007018
Trre9g05116 287 PRINTS Kinesin heavy chain signature 246 267 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre9g05116 287 PRINTS Kinesin heavy chain signature 68 89 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre9g05116 287 PRINTS Kinesin heavy chain signature 203 221 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre9g05116 287 PRINTS Kinesin heavy chain signature 175 192 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre9g05116 287 ProSiteProfiles Kinesin motor domain profile. 3 287 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre9g05116 287 Pfam Kinesin motor domain 33 278 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05116 Trre-Chr9 56673379 56680634 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05116 36 275 Calmodulin-binding Proteins AT5G65930 34.815 3.98e-37 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05116 K10400 - gmx:100806960 414.075