LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre9g05106	ATGGAAACGGAGGGAGAGAATCATCACATAGTGAAAGCGTTGAACCTACTTCGAAGCAGAATCTGCGACACCGGATTCATCTTCAAGGATTCTCCGGATGGAAACTACAGCAAACTGAAATTCATGATATCAAGTTCAGTGGCGGAGGCTTGCAACAATTCTATTCTTCTCCTCGGTCCACGTGGCTCCGGGAAGCTTGCGGTTTTGGATCTTGTCATTCAAGATTTGTTACTTCAATATCCAGACTCCATTTCAGTGGTCAGATTGAGTGGGCTTTTACACAGTGATGACATCTCTGCATTCAAGGAAATAGCTAGGCAGTTATGCATGGAGCATCAATTACTATTCTCGAAATCGGCATCATTTGATGACAATTCCCAATTTATGGTAGCCGTGTTAAAGGAATGTGGATTAGCACATAAAACTGTAATTTTTATTTTGGATGAGTTTGACCTCTTTGCTCAGGGTAAACAGCGGCTACTATATAGCTTGCTAGATGCAATGCAATCAGTATCATCACAAGCTGTAGTACTAGGCATTAGTTGCCGCCTGGATGCAGATCAGTTATTGGAGAAAAGAGTACGATCTCGTTTTTCACACAGAAAGCTGTTGTTCTTACCACCTTCATTAGAAGATTCACAAAGATTATTGGCACATATGCTGACATTACCAATAGATTCGGGCCTTCCACATGATTATGCTGATGAATTTAATAAAAGGGTTCAAAATATTATAGAAGACAAAAAGTTCAAAGAAATCTTCAACAAATATTTGAATTTTGACTCCTCTGTCAAAAATTTGTTGAGGTTCCTATTCTATGCAGTCTCTCATATGGATTTGCAGAGTGGGTTTCTGTCCCGGGAAAACTTTGAAACTGCGTTTTCAAGCATCCAGAGACAGCCCAAACTGGAGTGTTTAAGAACAGATTGCTCCATTTTAGAACTTTATATTTTGGTATGCATGAAGAGATTGGAAATTAAAGAGCAAAGTTTATGTAACTTCAACGCAGTAATGAAAGAGTATAAAAGCATTCATGATTCTTTCCAGACTTCTGACTACTATGCACGGAATGTTTGTTTAAGGGCATTTGAACATCTTATACATCGTGAATTAATATGTTTCTCAGACAATAGAGGACATAGTTTGTCTGTTGAATTTCGTCCCGTAAAGCTCTTAATTTCATCTGGTGAGCTGTATCAGGGATTAAAGGCATATCAGTCATGCCCTGCTATCCTTCAAAAGTTAATAGATTCGTGA	1257	0.3866	METEGENHHIVKALNLLRSRICDTGFIFKDSPDGNYSKLKFMISSSVAEACNNSILLLGPRGSGKLAVLDLVIQDLLLQYPDSISVVRLSGLLHSDDISAFKEIARQLCMEHQLLFSKSASFDDNSQFMVAVLKECGLAHKTVIFILDEFDLFAQGKQRLLYSLLDAMQSVSSQAVVLGISCRLDADQLLEKRVRSRFSHRKLLFLPPSLEDSQRLLAHMLTLPIDSGLPHDYADEFNKRVQNIIEDKKFKEIFNKYLNFDSSVKNLLRFLFYAVSHMDLQSGFLSRENFETAFSSIQRQPKLECLRTDCSILELYILVCMKRLEIKEQSLCNFNAVMKEYKSIHDSFQTSDYYARNVCLRAFEHLIHRELICFSDNRGHSLSVEFRPVKLLISSGELYQGLKAYQSCPAILQKLIDS	418

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre9g05106	418	PIRSF	ORC4	1	418	IPR016527	GO:0000808\|GO:0003677\|GO:0005634\|GO:0006260
	Trre9g05106	418	Pfam	Origin recognition complex (ORC) subunit 4 C-terminus	216	400	IPR032705	-
	Trre9g05106	418	Pfam	ATPase family associated with various cellular activities (AAA)	55	201	IPR003959	GO:0005524\|GO:0016887
	Trre9g05106	418	Gene3D	-	33	207	IPR027417	-
	Trre9g05106	418	PANTHER	ORIGIN RECOGNITION COMPLEX SUBUNIT 4	8	417	IPR016527	GO:0000808\|GO:0003677\|GO:0005634\|GO:0006260
	Trre9g05106	418	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	46	230	IPR027417	-
	Trre9g05106	418	FunFam	Origin of replication complex subunit 4	33	207	-	-

Showing 1 to 7 of 7 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre9g05106	Trre-Chr9	56600502	56605731	Tandem

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre9g05106	5	417	Core DNA Replication Machinery Family	AT2G01120	64.303	0.0	553

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre9g05106	K02606		-	gmx:100800582	657.521

Showing 1 to 1 of 1 entries