Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05105 ATGGAAACGGAGGGAGAGAATCATCACATAGTGAAAGCGTTGAACCTACTTCGAAGCAGAATCTGCGACACCGGATTCATCTTCAAGGATTCTCCGGATGGAAACTACAGCAAACTGAAATTCATGATATCAAGTTCAGTGGCGGAGGCTTGCAACAATTCTATTCTTCTCCTCGGTCCACGTGGCTCCGGGAAGCTTGCGGTTTTGGATCTTGTCATTCAAGATTTGTTACTTCAATATCCAGACTCCATTTCAGTGGTCAGATTGAGTGGGCTTTTACACAGTGATGACATCTCTGCATTCAAGGAAATAGCTAGGCAGTTATGCATGGAGCATCAATTACTATTCTCGAAATCGGCATCATTTGATGACAATTCCCAATTTATGGTAGCCGTGTTAAAGGAATGTGGATTAGCACATAAAACTGTAATTTTTATTTTGGATGAGTTTGACCTCTTTGCTCAGGGTAAACAGCGGCTACTATATAGCTTGCTAGATGCAATGCAATCAGTATCATCACAAGCTGTAGTACTAGGCATTAGTTGCCGCCTGGATGCAGATCAGTTATTGGAGAAAAGAGTACGATCTCGTTTTTCACACAGAAAGCTGTTGTTCTTACCACCTTCATTAGAAGATTCACAAAGATTATTGGCACATATGCTGACATTACCAATAGATTCGGGCCTTCCACATGATTATGCTGATGAATTTAATAAAAGGGTTCAAAATATTATAGAAGACAAAAAGTTCAAAGAAATCTTCAACAAATATTTGAATTTTGACTCCTCTGTCAAAAATTTGTTGAGGTTCCTATTCTATGCAGTCTCTCATATGGATTTGCAGAGTGGGTTTCTGTCCCGGGAAAACTTTGAAACTGCGTTTTCAAGCATCCAGAGACAGCCCAAACTGGAGTGTTTAAGAAATTGCTCCATTTTAGAACTTTATATTTTGGTATGCATGAAGAGATTGGAAATTAAAGAGCAAAGTTTATGTAACTTCAACGCAGTAATGAAAGAGTATAAAAGCATTCATGATTCTTTCCAGACTTCTGACTACTATGCACGGAATGTTTGTTTAAGGGCATTTGAACATCTTATACATCGTGAATTAATATGTTTCTCAGACAATAGAGGACATAGTTTGTCTGTTGAATTTCGTCCCGTAAAGCTCTTAATTTCATCTGGTGAGCTGTATCAGGGATTAAAGGCATATCAGTCATGCCCTGCTATCCTTCAAAAGTTAATAGATTCGTGA 1254 0.386 METEGENHHIVKALNLLRSRICDTGFIFKDSPDGNYSKLKFMISSSVAEACNNSILLLGPRGSGKLAVLDLVIQDLLLQYPDSISVVRLSGLLHSDDISAFKEIARQLCMEHQLLFSKSASFDDNSQFMVAVLKECGLAHKTVIFILDEFDLFAQGKQRLLYSLLDAMQSVSSQAVVLGISCRLDADQLLEKRVRSRFSHRKLLFLPPSLEDSQRLLAHMLTLPIDSGLPHDYADEFNKRVQNIIEDKKFKEIFNKYLNFDSSVKNLLRFLFYAVSHMDLQSGFLSRENFETAFSSIQRQPKLECLRNCSILELYILVCMKRLEIKEQSLCNFNAVMKEYKSIHDSFQTSDYYARNVCLRAFEHLIHRELICFSDNRGHSLSVEFRPVKLLISSGELYQGLKAYQSCPAILQKLIDS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05105 417 Pfam ATPase family associated with various cellular activities (AAA) 55 201 IPR003959 GO:0005524|GO:0016887
Trre9g05105 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 230 IPR027417 -
Trre9g05105 417 PIRSF ORC4 1 417 IPR016527 GO:0000808|GO:0003677|GO:0005634|GO:0006260
Trre9g05105 417 Gene3D - 33 207 IPR027417 -
Trre9g05105 417 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 4 8 416 IPR016527 GO:0000808|GO:0003677|GO:0005634|GO:0006260
Trre9g05105 417 Pfam Origin recognition complex (ORC) subunit 4 C-terminus 216 399 IPR032705 -
Trre9g05105 417 FunFam Origin of replication complex subunit 4 33 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05105 Trre-Chr9 56600502 56605731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05105 5 416 Core DNA Replication Machinery Family AT2G01120 64.218 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05105 K02606 - gmx:100800582 664.07