Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05079 ATGCCAGAAAATCTTAAAGAACCTCGTCTTGTAGCAAGAAAGTTCTTAGCCAAACCTCAACGAGAAGGTGTTGGTGCTGTTGTTAGAAGAAGCATAGGAAGATTTGAGCTCAAGTACTTTGATCCTTTCCTTGTCTTGGATGAATTTTCAGTTGCTGCTCCTTCTGGATTTCCTGATCATCCACATAGAGGCTTTGAGACAGTCACATATATGTTACAGGGTGCTGTAACACATGAAGATTTTGAAGGACACAAGGGAACAATAGAAGCTGGTGACTTGCAGTGGATGACTGCTGGAAGAGGGATAGTGCACTCAGAAATGCCTGCAGCTCAAGGAATCCAAAAGGGTCTACAACTATGGATCAACCTTGCTTCCCAACATAAAATGTAA 390 0.4231 MPENLKEPRLVARKFLAKPQREGVGAVVRRSIGRFELKYFDPFLVLDEFSVAAPSGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIEAGDLQWMTAGRGIVHSEMPAAQGIQKGLQLWINLASQHKM 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05079 129 SUPERFAMILY RmlC-like cupins 9 129 IPR011051 -
Trre9g05079 129 Gene3D Jelly Rolls 7 129 IPR014710 -
Trre9g05079 129 CDD cupin_pirin_N 26 123 - -
Trre9g05079 129 Pfam Pirin 28 121 IPR003829 -
Trre9g05079 129 PANTHER PIRIN-RELATED 5 129 IPR012093 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05079 Trre-Chr9 56393790 56395475 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05079 3 129 Calmodulin-binding Proteins AT3G59220 61.417 1.92e-53 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05079 K06911 - mof:131164811 245.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g05079 9 56393790 56395475 Trre9g05079 9 56393790 56395475 ECH