Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05078 ATGCCAGAAAATCTTAAAGAACCTCGTCTTGTAGCAAGAAAGTTCTTAGCCAAACCTCAACGAGAAGGTGTTGGTGCTGTTGTTAGAAGAAGCATAGGAAGATTTGAGCTCAAGTACTTTGATCCTTTCCTTGTCTTGGATGAATTTTCAGTTGCTGCTCCTTCTGGATTTCCTGATCATCCACATAGAGGCTTTGAGACAGTCACATATATGTTACAGGGTGCTGTAACACATGAAGATTTTGAAGGACACAAGGGAACAATAGAAGCTGGTGACTTGCAGTGGATGACTGCTGGAAGAGGGATAGTGCACTCAGAAATGCCTGCAGCTCAAGGAATCCAAAAGGGTCTACAACTATGGATCAACCTTGCTTCCCAACATAAAATGATTGAACCAAGGTATCAAGAAATTTTAAGCAAGGACATAGTAGAAGCTATGAAAGATGGTATCATGGTTAGAGTTATAGCAGGGGAAGCTCTTGGAGTAAAGTCACCAATTTACACAAGAACACCAACAATGTATTTGGATTTTACTCTTAAACCTGGATCACACCTACAACAACTTGTACCAAAATCTTGGAATGCTTTTGTGTACATCTTAGAAGGAGAGGGTGTTTTTGGAAATCAAAAATCTCATCCTACAACTTCTCACCATATTCTCCTTCTAGGTTTAGGGGATGGTCTAGAGGCATGGAATAAATCTTCTAAGGTACTTAGGTTTATTTTGGTTGGAGGTGAACCATTAGGTGAACCAATAGTACAATTTGGACCCTTTGTGATGAATACTCAACAAGAGATTGACCAAACTATTGATGATTTTGAAAACTATACCAATGGATTTGAGAAAGCAAGACATTGGAAGTCTGAGAGTGCAGTTGGTCTAGAGTTTTGA 891 0.3939 MPENLKEPRLVARKFLAKPQREGVGAVVRRSIGRFELKYFDPFLVLDEFSVAAPSGFPDHPHRGFETVTYMLQGAVTHEDFEGHKGTIEAGDLQWMTAGRGIVHSEMPAAQGIQKGLQLWINLASQHKMIEPRYQEILSKDIVEAMKDGIMVRVIAGEALGVKSPIYTRTPTMYLDFTLKPGSHLQQLVPKSWNAFVYILEGEGVFGNQKSHPTTSHHILLLGLGDGLEAWNKSSKVLRFILVGGEPLGEPIVQFGPFVMNTQQEIDQTIDDFENYTNGFEKARHWKSESAVGLEF 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05078 296 Gene3D Jelly Rolls 143 248 IPR014710 -
Trre9g05078 296 Pfam Pirin 28 121 IPR003829 -
Trre9g05078 296 Pfam Pirin C-terminal cupin domain 174 278 IPR008778 -
Trre9g05078 296 PIRSF Pirin 7 287 IPR012093 -
Trre9g05078 296 CDD cupin_pirin_C 171 247 - -
Trre9g05078 296 CDD cupin_pirin_N 26 123 - -
Trre9g05078 296 Gene3D Jelly Rolls 22 274 IPR014710 -
Trre9g05078 296 PANTHER PIRIN-RELATED 5 290 IPR012093 -
Trre9g05078 296 FunFam pirin 22 159 - -
Trre9g05078 296 SUPERFAMILY RmlC-like cupins 9 288 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05078 Trre-Chr9 56393790 56402588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05078 3 284 Calmodulin-binding Proteins AT3G59220 59.507 2.95e-127 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05078 K06911 - gmx:100790637 549.666