Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05058 ATGGCCGAAAATGCAAAGCGTTTCATCATCGGAATCGACCTCGGCACCACCTACTCTTGCGTCGGAGTCTGGCACCATGACAGTGTCCGAATCATCACCAACGACCACGGCAACCGGACCACCCCTTCTTGCGTCGCTTTCACCGACTCCGAACGCTTAATTGGCGATGCTGCCAAGAGCCAGGTCACCAGGAACCCTGTCAACACCATCTTCGACGCCAAGCGTTTGATTGGAAGGAGATTCTCTGATGCTTCTGTCCAGAGTGACATGAAGCTATGGCCATTCAAGGTTATTGCTGGTCCGGACGACAAACCCATGATTGTTGTTAGCTACAAGAATGAGGAGAAGCAACTCACTGCTGAGGAGATTTCCTCCATGGTCCTCATCAAAATGCGTGAGATCGCTGAGGCTTATCTTGGTTCCACCGTGAAGGACGTTGTTGTCACTGTTCCAGCATACTTCAATGACTCTCAGCGCCAGGCTACCAAGGATGCTGGTGTCATCGCTGGCCTTAATGTCATGCGTATCATCAACGAACCCACTGCTGCTGCACTTGCCTATGGCCTTGATACGGTGCCCATTGTTGATGATGAGAAACACGTTTTGATTTTTGACCTTGGTGGTGGTACTTTTGATGTCTCTTTTCTAACCATTGATGATGGTGTCTTTCAAGTTCATGCCACTGCAGGAGACAGCCATCTTGGAGGTGAAGACTTCGATAACAGGATGGTTGACAATTTTGTTCAGGAGTTCAAAAGGAAGCACGAGAAGGAAATTAGTGGGAACCCGAGGGCTTTAAGAAAGTTGAGGACCGCGTGTGAAAGGGCAAAAAGGACTCTCTCATCCACCAAACAGACCACCATCGAGATTGACTCATTATATGAAGGTATTGACTTCTATACCACAATCACTCGTCACAGGTTTGAAGAACTCAACATGGACCTCTTCAACAATTGCATAGACACCGTTGAGCGGTGTTTGAGGGAAGCTCAAATGGACAAGAACAGTGTCCATGATATTGTTCTTGTTGGTGGGTCTACGAGGATCCCAAAAGTGCAACAGTTGTTGCAGGATTTCTTCAATGGAAAGGAGCTCTGCAAGAGCATCAACCCAGATGAGGCTGTTGCTTATGGAGCTGCTCTTCAAGCTGCTGTCTTGAACCATGAGGAGAACAAGAAGGTTGAGGATATTACGTTGTTTGATGTTACTCCCCTTTCACTTGGTGTGGAAACTGTTGGTGGTGTCATGACTGTCCTGATTCGAAAGAACTGTGCAATCCCGTTCATGAAGGAGCAGGTTTTCTCAACCTCTTCCGACAACCAGCTTAGTGTGTTGATCAAGGTGTACGAGGGTGAGAGAACTAGGACCGAGGACAACAACTTGCTAGGTAAATTCGAGCTTACTGGCATCCTTCCTGCTCCAAGGGGTGTTCCTCAGATCAATACTTGCTTTAAAATTGATGTCAATGGTATCATGAATGTCTCTGCTGAGGACAGAGCTACAGGGAAGAAGAACAATATCACTATCACCAATGACAAGGGCAGGCTCTCGAAGGAGGAGATTGAGAAGATGGTGCAGGAGGCGAAGAAGTACAAGGTTGAGGATGAGGAGCATAAGAAGAAAGTTGAGGCCAAGATTGCCTTGGAACAAGGGGTGGAGAGGTATAAACCTTTCTGTTTTACAAAAGATGCTCCGGATCATCAACACCTGGAGGCACAAGTAGAACATGATATTTGCCATGATGCGATTACATTAGCATCCTTAAGTTCAAGTTTACAGTCTTTCCCTTCCAGAAACTCTGGTTATTATTTCAACTCTACAAAAGTGGCTTCACAAAAAATTACACTGGGACTAAAAGACGATAATTGCTATGTTATTGGATTGTATGGAAAGAGAGGTTGTGGTAAAACTGCATTGGTGAAAGCTAAGATGGAAGAGTATGAAAAGATTTTCCATAGAGTGATATTTCACCCCGTGTCTGAGAATCAAGATATCAAGAGCATTCAAGTGGGAATATCTAGGTCCTTGAATGTGTTTGATAAAGATGACACTGATGGTGCGAGAATAGTGAAAATAATTTCGGCATTAGAAAAAAAGGATAGAACTACCCTAGTCATCTTGGATAATTTTCCGTCAAAGTCTAAACTTGAAGAATTGGGAATTCCTTATAATAGCACACAGTACAAGTTCCTTTTGACCGCACGTGATGAGACAGAGTGCACCTTAATGGGATGTGATCGTTTGATTCTTCTGAAGCCCTTGTCTGATGAAGAAGCTATTACCCTGCTACATAAACTGTCCGGTGTTGAATCCCAAATTGATCTATTTAAATTGGTACGGGATGTTGCTTTTAAATGCAATGGCTTACCTGGTTTAATTAAAGATGTGGCGTTTTCCTTGAAAAAGAAGCCTATTGAGAAGTGGGAAGAATCCTTATTAGGCAAAGATTCTAAGACGGTATTGGAATGGACATTAGCTTTGAGTGATATTTCCCAATTGAAAGGAGAACATTTCCGCATATCCAATTCCAAAGGAGAGCATTATGAAAGGTACGTAATAAACAAATCTGAGATCAAGCATAAGACTTTAGCTTCTCTTACTGTGACTAGTTTGGCTGATCCTTCTGCCAATATAATTATATTTGGAGCTGTTGTTGATGATCGTTACATCGGAGAGATTCATGTGACTATCATTGCCACTTGCTTTTCACAATCTTTTCAGAAGAAGCTGCTGACAGATCCAAGGGCTGCAAAACTTCTTGACAAAGTGGCCGAGGGAAAACAAAGTAAGACAGAGCCCTCTCCCCTCAAGTCCTCAAACTTATCTTCCAAAGTTGAATCTAGAGCAACAACTTATCTTCCATACTTCGATTATTTTTCCTTGTTGTAG 2889 0.4354 MAENAKRFIIGIDLGTTYSCVGVWHHDSVRIITNDHGNRTTPSCVAFTDSERLIGDAAKSQVTRNPVNTIFDAKRLIGRRFSDASVQSDMKLWPFKVIAGPDDKPMIVVSYKNEEKQLTAEEISSMVLIKMREIAEAYLGSTVKDVVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAALAYGLDTVPIVDDEKHVLIFDLGGGTFDVSFLTIDDGVFQVHATAGDSHLGGEDFDNRMVDNFVQEFKRKHEKEISGNPRALRKLRTACERAKRTLSSTKQTTIEIDSLYEGIDFYTTITRHRFEELNMDLFNNCIDTVERCLREAQMDKNSVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAALQAAVLNHEENKKVEDITLFDVTPLSLGVETVGGVMTVLIRKNCAIPFMKEQVFSTSSDNQLSVLIKVYEGERTRTEDNNLLGKFELTGILPAPRGVPQINTCFKIDVNGIMNVSAEDRATGKKNNITITNDKGRLSKEEIEKMVQEAKKYKVEDEEHKKKVEAKIALEQGVERYKPFCFTKDAPDHQHLEAQVEHDICHDAITLASLSSSLQSFPSRNSGYYFNSTKVASQKITLGLKDDNCYVIGLYGKRGCGKTALVKAKMEEYEKIFHRVIFHPVSENQDIKSIQVGISRSLNVFDKDDTDGARIVKIISALEKKDRTTLVILDNFPSKSKLEELGIPYNSTQYKFLLTARDETECTLMGCDRLILLKPLSDEEAITLLHKLSGVESQIDLFKLVRDVAFKCNGLPGLIKDVAFSLKKKPIEKWEESLLGKDSKTVLEWTLALSDISQLKGEHFRISNSKGEHYERYVINKSEIKHKTLASLTVTSLADPSANIIIFGAVVDDRYIGEIHVTIIATCFSQSFQKKLLTDPRAAKLLDKVAEGKQSKTEPSPLKSSNLSSKVESRATTYLPYFDYFSLL 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05058 962 Coils Coil 266 286 - -
Trre9g05058 962 Pfam Hsp70 protein 9 559 IPR013126 GO:0005524|GO:0140662
Trre9g05058 962 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 393 549 IPR029047 -
Trre9g05058 962 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Trre9g05058 962 FunFam Heat shock 70 kDa protein 71 126 - -
Trre9g05058 962 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 385 561 IPR029047 -
Trre9g05058 962 PRINTS 70kDa heat shock protein signature 337 353 - -
Trre9g05058 962 PRINTS 70kDa heat shock protein signature 369 389 - -
Trre9g05058 962 PRINTS 70kDa heat shock protein signature 209 219 - -
Trre9g05058 962 PRINTS 70kDa heat shock protein signature 146 166 - -
Trre9g05058 962 PRINTS 70kDa heat shock protein signature 58 66 - -
Trre9g05058 962 PRINTS 70kDa heat shock protein signature 477 493 - -
Trre9g05058 962 PRINTS 70kDa heat shock protein signature 36 48 - -
Trre9g05058 962 PRINTS 70kDa heat shock protein signature 8 21 - -
Trre9g05058 962 PRINTS 70kDa heat shock protein signature 396 415 - -
Trre9g05058 962 SUPERFAMILY Actin-like ATPase domain 7 190 IPR043129 -
Trre9g05058 962 Gene3D - 585 747 IPR027417 -
Trre9g05058 962 FunFam Heat shock cognate 70 kDa protein 2 319 366 - -
Trre9g05058 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 812 IPR027417 -
Trre9g05058 962 Gene3D - 753 828 IPR042197 -
Trre9g05058 962 FunFam Heat shock protein 70 10 201 - -
Trre9g05058 962 FunFam Heat shock 70 kDa 235 318 - -
Trre9g05058 962 Gene3D Actin; Chain A, domain 4 235 318 - -
Trre9g05058 962 Gene3D - 832 914 IPR037103 -
Trre9g05058 962 PANTHER HEAT SHOCK PROTEIN 70KDA 10 554 IPR013126 GO:0005524|GO:0140662
Trre9g05058 962 Coils Coil 521 541 - -
Trre9g05058 962 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Trre9g05058 962 CDD HSPA1-2_6-8-like_NBD 10 387 - -
Trre9g05058 962 Gene3D - 71 126 - -
Trre9g05058 962 Gene3D - 10 384 - -
Trre9g05058 962 Pfam NB-ARC domain 621 810 IPR002182 GO:0043531
Trre9g05058 962 SUPERFAMILY Actin-like ATPase domain 196 386 IPR043129 -
Trre9g05058 962 Gene3D - 192 366 - -
Trre9g05058 962 FunFam Heat shock 70 kDa 391 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05058 Trre-Chr9 56282092 56285878 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05058 1 549 Calmodulin-binding Proteins AT3G12580 79.235 0.0 910
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05058 K03283 - sind:105171901 882.863