Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05056 ATGGTGCAGGAGGCGGAGAAGTACAAGGCTGAGGATGAGGAGCACAAGAAGAACGTTGAGGCCAAGATTGCCTTGGAACAAGAGGTGGAGAGGTATAAACCCTTATGTTTTCCAAAAGATGCTCCAGATCAACACTCGGAGGCACAAGTAGAACATGATACTTGCCATGACCCAATTACATTAGCATCCCTAAGTTCAAGTTTACAGTCATTCCCTTCCGGAAACTTTGGGTATTATTTCAACTCTACAAAAGTGGCTTCACAAAAAATTACAAAGGGACTAAAAGACGATAATTGCTATGTTATTGGATTGTATGGAAAGAGAGGATGTGGTAAAACAACATTGGTGAAAGCTAAGATGGAAGAGTATGAAAAGATTTTCCATAGAGTGATATTTCTCTCCGTGTCTGAGAATCAAGATATCAAGAGCATTCGAGTGGGAATTTCTAGCTCCTTGAATATGTTTGATAAAGATGACAGTGATGGTGCGAGAATAATGAAAATAATTTTGGCATTAGAAAGGAAGGATAGAACTACCCTAGTCATCTTGGATAATTTTCCGTCAAAGTCTAAACTGGAAGAATTGGGAATTCCTTATAATAGCAAACACTACAAGTTCCTTTTGACCGCACGTGATGAGACAGAGTGCACCTTAATGGGATGTGATTGTTTGATTCCTCTGAAGCCCTTGTCTGATGAAGAAGCTATTACCCTGCTACATAAACTGTCCGGTGTTGAATCCCAAACTGATCTATTTAAAGTGGTACGAGATGTTGCTTTTAAATGCAAAGGCTTACCTGGTTTAATTAAAGATGTGGCGTTTTCCTTGAAAAAGAAGCCTATTGAGAAGTGGGAAGAATCCTTAGTCATGGAACCAACCGACATAAGGCATCTAAAAGGGAGGTACGGTGAAGCTATGGCCGAACATGGAAAAGAGTTAGGCAAAGATTCTAAGACGGTATTGGAATGGACATTAGCTTTGAATGATATTTGCCGATTGAAAGGAGAACATTTCCGCATTTCCAACTTCAAAGGAGAGCATTACGAAAGGTACAGAGATCAACTTATTGGAAAGATCACAAGATTTGCCCATAATAACAAACATCGCTTGCATATACAAAGCATTTTGCCTGATCTTTCTGTCAATATAATATTTGGAGCTGTTGTTGATGATCGCTACACCGGAGAGATTCATGTGACTATCATTGCCACTGGCTTTTCGCAATCTTTTCAGAAGAAGCTGCTGACAGATCCAAGGGCTGCAAAACTTCTTGACAGAGTGGCCGAAGGAAAAGAAACCCCATATATCAAGAAGATTACATAA 1323 0.3976 MVQEAEKYKAEDEEHKKNVEAKIALEQEVERYKPLCFPKDAPDQHSEAQVEHDTCHDPITLASLSSSLQSFPSGNFGYYFNSTKVASQKITKGLKDDNCYVIGLYGKRGCGKTTLVKAKMEEYEKIFHRVIFLSVSENQDIKSIRVGISSSLNMFDKDDSDGARIMKIILALERKDRTTLVILDNFPSKSKLEELGIPYNSKHYKFLLTARDETECTLMGCDCLIPLKPLSDEEAITLLHKLSGVESQTDLFKVVRDVAFKCKGLPGLIKDVAFSLKKKPIEKWEESLVMEPTDIRHLKGRYGEAMAEHGKELGKDSKTVLEWTLALNDICRLKGEHFRISNFKGEHYERYRDQLIGKITRFAHNNKHRLHIQSILPDLSVNIIFGAVVDDRYTGEIHVTIIATGFSQSFQKKLLTDPRAAKLLDRVAEGKETPYIKKIT 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05056 440 Gene3D - 361 422 IPR037103 -
Trre9g05056 440 Gene3D - 229 302 IPR042197 -
Trre9g05056 440 SUPERFAMILY Tubulin C-terminal domain-like 378 414 IPR008280 -
Trre9g05056 440 Gene3D - 1 37 IPR029048 -
Trre9g05056 440 PRINTS Disease resistance protein signature 101 116 - -
Trre9g05056 440 PRINTS Disease resistance protein signature 262 276 - -
Trre9g05056 440 PRINTS Disease resistance protein signature 173 187 - -
Trre9g05056 440 Pfam NB-ARC domain 89 286 IPR002182 GO:0043531
Trre9g05056 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 287 IPR027417 -
Trre9g05056 440 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 35 297 - -
Trre9g05056 440 Coils Coil 2 22 - -
Trre9g05056 440 Gene3D - 77 222 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05056 Trre-Chr9 56270881 56276627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05056 1 27 Calmodulin-binding Proteins AT3G12580 85.185 5.31e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05056 - - lja:Lj0g3v0120799.1 344.354