Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05055 ATGGCTTCTAATTCAGACCAATGGGTGAAGGAATACAATGAAGCAATGAAACTTGCTGATGACATCAGCAGCATGGTTTCTGAGTGGAGTTCAAATCCTGCATCGGGACCAGAAACCCAGAGGCAATCATCTGCTATAAGAAGGAAGATTACAATATTAGGGACTAGGCTTGATAGCTTGCAATCCCTTTTATCAAAGCTTCCTGCAAAGCCGCCGCTATCTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTACAAATTTGAGATCAAAAGTTAATGAAATGGCTTCTAAGCTGAACATGTCAAATTTCGCAAACAAGGATAGCTTGCTTGGTCCAGAAGTAAAACCAGATGTAATGAGTAGAACTGTTGGCCTGGACAACAATGGACTTGTTGGATTTCAACGACAAATTATTAAAGAACAAGATGAGAGCCTCGAGAGTTTGGAGCAGACTGTAATCAGCACAAAACACATTGCGTTGGCAGTGAATGAAGAGCTGGGTCTACACACAAGACTCATTGATGATTTAGACCAACATGTTGACGTCACAGACTCTCGGCTTAGGCGGGTGCAAAAGAATTTGGCAGTATTAAATAAACGAGCCAAAGGTAGTTGCTCTTGCTTCAACATGCTCTTATCAGTCATCGGTATTGTGTTTTTGGTTGTTTTGATTTGGCTGTTGGTAAAATATTTGTAA 699 0.412 MASNSDQWVKEYNEAMKLADDISSMVSEWSSNPASGPETQRQSSAIRRKITILGTRLDSLQSLLSKLPAKPPLSEKEMNRRKDMLTNLRSKVNEMASKLNMSNFANKDSLLGPEVKPDVMSRTVGLDNNGLVGFQRQIIKEQDESLESLEQTVISTKHIALAVNEELGLHTRLIDDLDQHVDVTDSRLRRVQKNLAVLNKRAKGSCSCFNMLLSVIGIVFLVVLIWLLVKYL 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05055 232 CDD SNARE_Qc 139 196 - -
Trre9g05055 232 SUPERFAMILY t-snare proteins 13 100 IPR010989 GO:0016020|GO:0016192
Trre9g05055 232 Gene3D - 138 200 - -
Trre9g05055 232 SUPERFAMILY SNARE fusion complex 127 197 - -
Trre9g05055 232 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 136 198 IPR000727 -
Trre9g05055 232 PANTHER SYNTAXIN 31 220 IPR045242 -
Trre9g05055 232 SMART tSNARE_6 131 198 IPR000727 -
Trre9g05055 232 FunFam syntaxin-51 isoform X2 138 200 - -
Trre9g05055 232 Pfam SNARE domain 173 224 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05055 Trre-Chr9 56267340 56268875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05055 1 232 SNARE and Associated Proteins AT1G16240 68.240 2.07e-118 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05055 K08503 - gmx:100782666 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g05055 9 56267340 56268875 Trre9g05055 9 56267340 56268875 ECH
Trre5g01269 5 8877559 8879318 Trre9g05055 9 56267340 56268875 PCT