Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05050 ATGAAGTTGCTTCCACCACCAATAATGTTCCATTTAGTATTGTTTATTTGTTGTTTTTATTTTGGTAGAGCCATAGATTGTGGTGGGAAGCAAGTTGTAAATACCATCAATGTTGACCAACAAAGAAAAGGAGCCTTCCAAACAATTCAAGCTGCCATTGATTCTATAAAGAACCCAAATGATCGATGGGTTATGATTAATATAAATCCTGGCATATACAAGGAACAAATTCTTATACCCGTTAGAAAGCCATGCATTATTTTAAAAGGATCGGGTAGCAATAACACAATCATTACTTACAACAAATCATTTCATGATGGTGGCCAATCCATGAGTGCTACATTTCATTCATCTCCACCTAATGTAATTTTGAGTGGTATTAAATTTCAGAACACATTTGGATATAACGGACCAGCAGTAGCAGCATCTATATATGGTGATAAGACTGCAATATTTGACTGTAGTTTCATTGGTTATCAAGATACTTTACTTTCATCAAAGGGGCGCCAATACTTTAAAAATTGTTATATTCAAGGTGAAGTAGACTTCATTTGTGGTGGTGGTCAATCTTATTTTGAGAATTGTGTGATGAATGCTACTCAAGGAGAATCTAGACCATCAGGTTTTGTGACAGCACAACGTAGGGATACACCAAATGAATCAAATGGATATGTTTTTAGAGGAGGGTCGATTGTTGGAAATGGTGAGGTGAATCTTGGAAGACCTTGGGGACCTTACGCAAGAGTTATATTTTGGGGAACATATTTTTCTTCAGTGGTAACTCCTCAAGGATGGAATGCTTGGAATGATTCAAGTATAAGCCAAGTGCAAAAGAGCACATTTGCAGAAGTTAATTGTACAGGACCGGGAGCCAACACTAAGGAACGTGTCACATGGGAGAAGGAACCAAAAGACTTAAACTTAAATGAATATACTTTGTCATCTTTCATAAATAATGATGGATGGCTTGCCAATATACCATCTTTATAA 990 0.3636 MKLLPPPIMFHLVLFICCFYFGRAIDCGGKQVVNTINVDQQRKGAFQTIQAAIDSIKNPNDRWVMININPGIYKEQILIPVRKPCIILKGSGSNNTIITYNKSFHDGGQSMSATFHSSPPNVILSGIKFQNTFGYNGPAVAASIYGDKTAIFDCSFIGYQDTLLSSKGRQYFKNCYIQGEVDFICGGGQSYFENCVMNATQGESRPSGFVTAQRRDTPNESNGYVFRGGSIVGNGEVNLGRPWGPYARVIFWGTYFSSVVTPQGWNAWNDSSISQVQKSTFAEVNCTGPGANTKERVTWEKEPKDLNLNEYTLSSFINNDGWLANIPSL 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05050 329 FunFam Pectinesterase 30 327 - -
Trre9g05050 329 Gene3D - 29 328 IPR012334 -
Trre9g05050 329 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 31 324 - -
Trre9g05050 329 Pfam Pectinesterase 37 319 IPR000070 GO:0030599|GO:0042545
Trre9g05050 329 SUPERFAMILY Pectin lyase-like 34 323 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05050 Trre-Chr9 56245902 56247599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05050 10 269 Carbohydrate Esterase AT2G19150 41.852 7.02e-63 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05050 - - tpra:123922273 407.527