Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05048 ATGGAACCGACGACGGATCCGCCACCGGAGATTAAGAACGGAAGACGAGAGGAACAAGAGGAACAACAACGGTGCAACAAGAAGGCGAAGGTTGATGTAATTGAGAACTCGGAATCGGTGGAATTGAAACGAGTGGCGGAGATTGTTTTGGTTTTATCAACGATGGCGACGATGCGTGGTGGAAAGAAACCTACTGATGTGGAAATTGAGCTTATGAGAGAGGCGAGGAGTAAGCTTGCGGTTCTATGTCAAGGGATTGCTCCCAAGGATATTGTTGCTGTTGAAGCTATTGGTTCTGTAATTCAGGATCTTGGTTTGAATGTTAAGGTTGAGGAGCAAAGGTTAGGGTTTCGGACTACGCCTAAAATGTCTATTGCTGAACGGTATTCGTCTGCAAAATTGAAGATGGAGGAATCAAAGAAATTCTCTGCACCACCCACAACATATACATCTCAGCCCTTGCAAACAAACACCAGTGGAATGGTTGACAATCGTGTGCCAACAAATGCTGTTCGAATGTTTGCGTCTGATAAATCAAACCACACGGCAATATCATCTACAGTTCCCATGGTGTCTATTCCTCCCCATATTTCTGCAGGATCTTCTGCAGCATTGCAATATCAATCAACCAGCAATGAAGTGAGACCGCCCATTGTTTCTGGTGTAATGCCTAACAATCACATGGGAAGAAATCCATCGTCTGTAGCATTGCCTAGAGTTGAAAACCCACAGTTTAAAGTTACTGGAGGATTGAGTGGGGCTCCTTATGTGCTTCAGGTCCAAGCAAATTCACTGCCAAACCAATCATCGGTGAATGCATGGTCATTACAGACTCAACCTGTGTCATTAGCTAGAAATGTATCAGAAAACAAGGCGCTGCCTGCTCATAACTCTGTCAAGGTTGAAGGAACTGCTGGTGCAACCGTATCTAGGACAGGTCCACAAGTAACAACAGCTCAGAGTGTTAGACCATTTATGACTCAAATGGGACCTGGAAATATGTCTAGCATGCACCAGCCATTGCAGGGTGGGAACATGGTTCAACCTCCTACTATTCCTAGTCACTCTGATATTGCAAAGGTTGTCCAGAAATTGTTGCTACCGAAGGTTCCTGACAATCCTACATGGACTCCTCCGTCAAGGGATTATATGAGTAAGACTTTCACATGTCAGACGTGTGAGCTCACTGTCAGTGAGGTTGATTCTGTTCTTATGTGTGATGCTTGTGAAAAGGGATTTCACTTAAAGTGCCTGCAGCCAGCAGTCATTAGAGGAATTCATAATAGAGTTGATTGGCACTGCATGAGGTGCTTGAGTTTAAGTGGTGGAAAGCCTTTGCCTCCAAAATATGGCCGTGTGATGAGATCCTCAATTACATCACCAAGTTTTCCCTCTAATACAGCTGGTATTCAACCATCTTCAGAGAAGAAAGCAGAGAACTTAGATTCAAAGGTCAGCCCACAGATGTTTACATCAAATGGAAACTCTGTTCCAACTGTTTCCAGTGCCAATGAAAATACTGAGCCGTCATTTGAAAATACCCCTGATACGAGAGATATACAAGGTTCCAACATTTCATCTAGCATTGAAACCATTGATGAGAAGCCTGATCCGAACATATGTATGAAATCTGCTGCTTGTAGTGCTTCCACTGGCTTGCAGGGTGAAAGTTATGCTGAACAAATAGATTCAAAGGCTTTGACCAGTAAAGATACTTCAGAATCTGAAACTCTTCCTAAATTATCTGAGCCAGCTAAATGTGAAAATTTGCAACCATCACAAGATTCTCAAGTTGAGATAACAGTGTTACACGACAATGCTGAAATATCATCAGATAGACACGTTAGTAGTAGTTTGCCAATTAGTAATCAAAAGGAATCTCATGGAGGAGAAAATATAACTTCTGATATCAACCACAATGACCTAGATGCTCCACAACCAAATTCTGTCGGAGGTTCTGGAACTAATACTGAAGGTATTCAGCACTCTGCTTTATCTTCAGATAGCTCACATGCTGTAGAATGGATTGGTGATGTTGTACAACTTGTTGATGAGAAAAAGTATTATCAATCTTGCTGCATTGATGGAGTAACATATAGGCTGCAGGGTCATGCTTTTTTCACATCCAACCATGGCAAATTAACACCTTCTAAACTTCAGTCTATGTGGGAAGATTCCAAAACTGGGGTGAAGTGGGTTAAGGCAACAAAGTGCTACTTCCCTGATGATTTGCCGGGGAATATCGGTCATCCTTGTATATCTGAAGTCAATGAGGTGTATGAATCTAATAGTGATAGAATAGAAATGGCTAGCTCTATCCGAGGCCCTTGTGTAGTCCTTCCATACGATAAATTTAAACAAGAAAATGACAGAAGATCTCAATTTGGAATTGAGGCAAGTGCTAGTGTACAGCCTATTTTCCTTTGCAGGTGGTTTTATGATGAAATCAAAAAGTCATTTCAACCTGTTATCAGTTGA 2478 0.4205 MEPTTDPPPEIKNGRREEQEEQQRCNKKAKVDVIENSESVELKRVAEIVLVLSTMATMRGGKKPTDVEIELMREARSKLAVLCQGIAPKDIVAVEAIGSVIQDLGLNVKVEEQRLGFRTTPKMSIAERYSSAKLKMEESKKFSAPPTTYTSQPLQTNTSGMVDNRVPTNAVRMFASDKSNHTAISSTVPMVSIPPHISAGSSAALQYQSTSNEVRPPIVSGVMPNNHMGRNPSSVALPRVENPQFKVTGGLSGAPYVLQVQANSLPNQSSVNAWSLQTQPVSLARNVSENKALPAHNSVKVEGTAGATVSRTGPQVTTAQSVRPFMTQMGPGNMSSMHQPLQGGNMVQPPTIPSHSDIAKVVQKLLLPKVPDNPTWTPPSRDYMSKTFTCQTCELTVSEVDSVLMCDACEKGFHLKCLQPAVIRGIHNRVDWHCMRCLSLSGGKPLPPKYGRVMRSSITSPSFPSNTAGIQPSSEKKAENLDSKVSPQMFTSNGNSVPTVSSANENTEPSFENTPDTRDIQGSNISSSIETIDEKPDPNICMKSAACSASTGLQGESYAEQIDSKALTSKDTSESETLPKLSEPAKCENLQPSQDSQVEITVLHDNAEISSDRHVSSSLPISNQKESHGGENITSDINHNDLDAPQPNSVGGSGTNTEGIQHSALSSDSSHAVEWIGDVVQLVDEKKYYQSCCIDGVTYRLQGHAFFTSNHGKLTPSKLQSMWEDSKTGVKWVKATKCYFPDDLPGNIGHPCISEVNEVYESNSDRIEMASSIRGPCVVLPYDKFKQENDRRSQFGIEASASVQPIFLCRWFYDEIKKSFQPVIS 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05048 825 MobiDBLite consensus disorder prediction 455 476 - -
Trre9g05048 825 SUPERFAMILY FYVE/PHD zinc finger 381 445 IPR011011 -
Trre9g05048 825 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 341 438 IPR013083 -
Trre9g05048 825 MobiDBLite consensus disorder prediction 455 523 - -
Trre9g05048 825 MobiDBLite consensus disorder prediction 1 27 - -
Trre9g05048 825 MobiDBLite consensus disorder prediction 612 653 - -
Trre9g05048 825 CDD BAH 696 823 - -
Trre9g05048 825 MobiDBLite consensus disorder prediction 484 523 - -
Trre9g05048 825 Pfam PHD-finger 390 438 IPR019787 -
Trre9g05048 825 MobiDBLite consensus disorder prediction 9 27 - -
Trre9g05048 825 SMART PHD_3 389 438 IPR001965 -
Trre9g05048 825 Gene3D - 676 824 IPR043151 -
Trre9g05048 825 ProSiteProfiles Zinc finger PHD-type profile. 387 440 IPR019787 -
Trre9g05048 825 MobiDBLite consensus disorder prediction 564 594 - -
Trre9g05048 825 CDD PHD_SF 389 437 - -
Trre9g05048 825 MobiDBLite consensus disorder prediction 143 161 - -
Trre9g05048 825 ProSiteProfiles BAH domain profile. 697 824 IPR001025 GO:0003682
Trre9g05048 825 MobiDBLite consensus disorder prediction 137 161 - -
Trre9g05048 825 MobiDBLite consensus disorder prediction 564 579 - -
Trre9g05048 825 MobiDBLite consensus disorder prediction 611 653 - -
Trre9g05048 825 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 6 823 - -
Trre9g05048 825 ProSitePatterns Zinc finger PHD-type signature. 390 437 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05048 Trre-Chr9 56234258 56240621 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre9g05048 PHD 5.7e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05048 - - gmx:100807139 1171.38