Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05020 ATGGAGAACTCTACAATTCATTTGTCTTTGGAGTATCTTAAGGCAGTAGAAGTTGAATTTCAACATGATAGGATCAAGTTAGATGTGTTTAAAAAAATGCTAAAAGATTTCAACGATGAAAAAATTGATGTAGGAGATGTCAAAGTAAGAGTGAAGGGATTGTTTAAAGATCATACAAATTTAATTTCAGGATTCAATATCTTCTTGCCCAAGAAACATCAAATCACTCCTAACTTAGACTATGAAGATGCATCGGCGTTTACAAAGGCAATAATGAACGCGTTTCAAGATAAGAAAGAAAATCATGAGAAGTATTTAGATATTCTTTTTGAATGGAATTACAAAAGAGCTGGTAGATCAGTTGATATAAAAAGTATCATGGCAAGAATGAAGGAGTTGCTTAAAGAGCATATAGATTTATATTTTATATTTGAAGCATTCGTGTCACAAACTGAATATTCCACGACAACGGTTGATGATGACTCTAAGAAGAAAATCATGAAAAGAGAAGCGGAGAATGAAAGATCAAACAAATCATCGAAGAAACTCAAGATCAACAACAACAATAATGATAATGTCCAGCTACAAGAAGAGCGACCTGAGCTTCCGTTGGCGTTTAAAGAAAGGATTGAACAGTTGGCAGGTAGTGACGTGATGTTGGTGATTCAAAAGGAACTGACCAAGTGTGACTTGACAGAAAACCACGGTCGGTTGTCCATACCAAAAAAACAAGTAATTAACGAGAAATTTCTAGAACCAAATGAGAAATCATCCTTGCATTATGATCGTAAAGAGGGACGCAAGACGCGTATTCGTATGTCAGTGTCTGTGTTGGATCCAAGTCTTGAACTCTGGGATCGTATGTCCATCAAGAAGTGGAGAATGGTGAAATGTGAAACCTACAATATCACAGACGATTGGTACGAACTCGTAAAGAAAAATAATTTGAAAGAAGGTCAAAAGGTGCAGGTTTGGTCTTTTAGAAGGCATCGACAGCTCTGCTTTGCACTCGTCAAGCTCTAA 1023 0.3627 MENSTIHLSLEYLKAVEVEFQHDRIKLDVFKKMLKDFNDEKIDVGDVKVRVKGLFKDHTNLISGFNIFLPKKHQITPNLDYEDASAFTKAIMNAFQDKKENHEKYLDILFEWNYKRAGRSVDIKSIMARMKELLKEHIDLYFIFEAFVSQTEYSTTTVDDDSKKKIMKREAENERSNKSSKKLKINNNNNDNVQLQEERPELPLAFKERIEQLAGSDVMLVIQKELTKCDLTENHGRLSIPKKQVINEKFLEPNEKSSLHYDRKEGRKTRIRMSVSVLDPSLELWDRMSIKKWRMVKCETYNITDDWYELVKKNNLKEGQKVQVWSFRRHRQLCFALVKL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05020 340 CDD B3_DNA 222 335 IPR003340 GO:0003677
Trre9g05020 340 ProSiteProfiles PAH domain profile. 1 72 IPR003822 GO:0006355
Trre9g05020 340 SUPERFAMILY PAH2 domain 3 72 IPR036600 GO:0006355
Trre9g05020 340 Gene3D - 219 340 IPR015300 -
Trre9g05020 340 SUPERFAMILY DNA-binding pseudobarrel domain 220 337 IPR015300 -
Trre9g05020 340 Pfam Paired amphipathic helix repeat 30 69 IPR003822 GO:0006355
Trre9g05020 340 SUPERFAMILY PAH2 domain 75 149 IPR036600 GO:0006355
Trre9g05020 340 Gene3D Paired amphipathic helix 73 150 IPR036600 GO:0006355
Trre9g05020 340 Pfam B3 domain-containing protein At2g31720-like 215 313 IPR005508 GO:0003677
Trre9g05020 340 ProSiteProfiles PAH domain profile. 77 151 IPR003822 GO:0006355
Trre9g05020 340 Coils Coil 168 188 - -
Trre9g05020 340 MobiDBLite consensus disorder prediction 158 190 - -
Trre9g05020 340 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 101 340 IPR005508 GO:0003677
Trre9g05020 340 Gene3D Paired amphipathic helix 9 70 IPR036600 GO:0006355
Trre9g05020 340 MobiDBLite consensus disorder prediction 158 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05020 Trre-Chr9 56036109 56037265 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05020 201 337 B3 DNA Binding Superfamily AT1G05930 27.536 2.70e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre9g05020 DUF313 2.5e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05020 - - tpra:123920509 290.812