Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05003 ATGGCTTCCACTTACCGTGACCGTACATCGGAGTTCCGATCACTGACGGAGACTCTAAAGAAGATCGGCGGCGGAGAAGGTGGAGCCACAGCACCGCCTAATCAACAACCGTCTACCTCTCAAAATTCCTATTCGAGATCCGAATTCAACCGAAAGGCATCACAAATCGGATTAGGAATTCACGAAACCTCACAGAAAATCGCGAGACTCGCTAAGTTGGCGAAGAAATCGTCGATGTTTAATGATCCAATAATGGAAATTCAAGAACTGACTGCATTGATTAAGACTGATATAACAACGTTGAATTCGGCTGTTTTGGATTTGCAAACTATTCAGAAAATTGATTTAGCTGATGAGAATTATTCAGAAGATAGGGTTGTACATTCCAATGCTGTTTGTGATGACTTGAAGAACAAGCTCATGGGAGCTACAAAGCATCTTCAAGATGTTTTGACCACTAGGACAGAGAATATCAAGGCTCACGAGAATAGGAGGCAGATATTTTCTAAGAACCCTTTACAGCATCCGCCAAAGCCAACTATTGAGCCGCCACCTTGGTCTAATTCAACAAATGCATTTGAAACTGAGAGTTCACAACAAACATCAGGATTACCATCAAATGGAATTCCAGCTGGCAATCAGCTAAGACGAAGATTAGCTGTGGAAAACACTCCATCCCAGCAAATGGAGATGTCTTTGGTACAACAGGTTGTTCCTCGGCACGAAGAATATGCTCAAAATCGGGCATCTGCTCTGCACAATGTGGAATCTACTATTACCGAACTTAGTGGAATCTTCACACATTTGGCTACAATGGTTGCCCATCAAGGAGAGCTAGCTATCAGGATTGATGACAATATGGATGAGTCATTGGCAAATGTTGATGGAGCTCACAGTTCTTTATTGAGGCATCTCAATCGAATATCATCAAATAGGTGGCTTATGATAAAAATATTTGCCATTTTGATATTTTTTCTGATGATCTTCATATTCTTTGTGGCCTAA 1005 0.4139 MASTYRDRTSEFRSLTETLKKIGGGEGGATAPPNQQPSTSQNSYSRSEFNRKASQIGLGIHETSQKIARLAKLAKKSSMFNDPIMEIQELTALIKTDITTLNSAVLDLQTIQKIDLADENYSEDRVVHSNAVCDDLKNKLMGATKHLQDVLTTRTENIKAHENRRQIFSKNPLQHPPKPTIEPPPWSNSTNAFETESSQQTSGLPSNGIPAGNQLRRRLAVENTPSQQMEMSLVQQVVPRHEEYAQNRASALHNVESTITELSGIFTHLATMVAHQGELAIRIDDNMDESLANVDGAHSSLLRHLNRISSNRWLMIKIFAILIFFLMIFIFFVA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05003 334 SMART tSNARE_6 237 304 IPR000727 -
Trre9g05003 334 MobiDBLite consensus disorder prediction 162 211 - -
Trre9g05003 334 PANTHER SYNTAXIN 47 328 IPR045242 -
Trre9g05003 334 Pfam SNARE domain 279 330 IPR000727 -
Trre9g05003 334 MobiDBLite consensus disorder prediction 31 48 - -
Trre9g05003 334 ProSitePatterns Syntaxin / epimorphin family signature. 248 287 IPR006012 GO:0005484|GO:0006886|GO:0016020
Trre9g05003 334 MobiDBLite consensus disorder prediction 185 209 - -
Trre9g05003 334 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 242 304 IPR000727 -
Trre9g05003 334 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 21 IPR021538 -
Trre9g05003 334 MobiDBLite consensus disorder prediction 21 48 - -
Trre9g05003 334 SUPERFAMILY t-snare proteins 45 297 IPR010989 GO:0016020|GO:0016192
Trre9g05003 334 CDD SNARE_syntaxin5 245 320 - -
Trre9g05003 334 Gene3D - 41 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05003 Trre-Chr9 55914828 55919382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05003 1 334 SNARE and Associated Proteins AT5G05760 61.988 3.38e-143 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05003 K08490 - gmx:100777383 488.419