Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05001 ATGTCGTCGGCTTCAGAGATTCTCCAAGAACTTGAATCACTGAAGAACGAAAAGACCAAAATTGAACACAAAATATCACTTCTTGAAGCTCAATTGAAAGATATTAATCTCCAAAAACAAGTTTCTGCATCATCCAATGGTTCTTCACCTTACCCTACAAATGGTTTGGAACCTCACATGATTCATAGATACAGTCGCCACCTTGTTCTTCCTTCTTTTGGTGTTCAAGGGCAAGCAAATCTGTCGAAGTCGTCAATTTTAGTTGTGGGAGCTGGAGGATTGGGTGCTCCTGCGTTGTTATATTTTGTAGCTTCTGGTGTTGGTAAATTGGGTATTGTTGATCATGACAAGGTTGAGTTGAGTAATATGCATCGACAGATTATACACACCGAAGCATATATTGGTCTGCCAAAAGTGAAATCCGCTGCTGCTGCTTGTCGCTCGGTCAACTCATCTATTGAAGTCGTGGAACATGAAGAAGCTTTGCGGAATTCCAATGCTTTGGAAATTTTCAGCAAATACGATATAATAGTGGATGCAACAGACAATGCTCCCACCCGGTATATGATCAGTGACTGCTGTGTAGTACTAGGAAAGCCCCTTGTATCAGGTGCTGCTGTAGGATTGGAAGGGCAGCTCACTATCTACAATCACAATGGTGGCCCTTGTTATCGATGTCTCTTTCCAACGCCACCACCTAGAACAGCTTGCCAAAGTTGTGCCGACGCTGGTGTACTAGGAGTAGTTCCTGGTATAATTGGCTGTCTCCAAGCTCTCGAGGCAATTAAGATTGCAGCTTCTGTTGGTGAACCACTCTCCGGAAGAATGCTTCTCTTTGATGCATTGTCTGCACGGATCCGTATTGTTAAAATCAGAGGAAGGTCAATGCAATGTGAAGCTTGTGGAGAAAATGCAACATTCAATCAGCAGTACTTCCGTGAATTTGATTACGAGAAGTTTACTCAGACTCCTTTATTTGTGCCACCTTTGAAGTTAAATCTACTTCCTAATGAATCAAGAATCAGCAGCAAGGAGTACAGCGAAATAATTCTCAACAAGGAACGACATGTGTTGGTTGATGTTAGACCAGCTCACCATTTCAAGATTGTGTCACTTCCAAATTCCTTGAACATTCCATTCTCAACTTTAGAGTCTAGGTTGCCGGAAATATCGTCAGTTTTGAAGAAAGATGAAGAGGAAAAAGGCGCCGTTTCTGAATCAAATGCACAATTGTATGTAGTATGCAGGAGAGGAAATGATTCTCAAAGGGCTGTTCAATATCTTCACAAAATGGGTTTTAATTCTGCTAAGGATATTGTTGGAGGTTTAGAGTCTTGGGCTCAAAATGTTGATCCTAACTTCCCTACTTATTAG 1374 0.4156 MSSASEILQELESLKNEKTKIEHKISLLEAQLKDINLQKQVSASSNGSSPYPTNGLEPHMIHRYSRHLVLPSFGVQGQANLSKSSILVVGAGGLGAPALLYFVASGVGKLGIVDHDKVELSNMHRQIIHTEAYIGLPKVKSAAAACRSVNSSIEVVEHEEALRNSNALEIFSKYDIIVDATDNAPTRYMISDCCVVLGKPLVSGAAVGLEGQLTIYNHNGGPCYRCLFPTPPPRTACQSCADAGVLGVVPGIIGCLQALEAIKIAASVGEPLSGRMLLFDALSARIRIVKIRGRSMQCEACGENATFNQQYFREFDYEKFTQTPLFVPPLKLNLLPNESRISSKEYSEIILNKERHVLVDVRPAHHFKIVSLPNSLNIPFSTLESRLPEISSVLKKDEEEKGAVSESNAQLYVVCRRGNDSQRAVQYLHKMGFNSAKDIVGGLESWAQNVDPNFPTY 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05001 457 SMART rhod_4 342 452 IPR001763 -
Trre9g05001 457 Pfam ThiF family 64 299 IPR000594 -
Trre9g05001 457 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 61 424 IPR035985 GO:0008641
Trre9g05001 457 Coils Coil 4 38 - -
Trre9g05001 457 Gene3D - 339 457 IPR036873 -
Trre9g05001 457 ProSiteProfiles Rhodanese domain profile. 352 455 IPR001763 -
Trre9g05001 457 Pfam Rhodanese-like domain 344 448 IPR001763 -
Trre9g05001 457 CDD ThiF_MoeB_HesA_family 63 291 - -
Trre9g05001 457 Gene3D - 58 307 - -
Trre9g05001 457 CDD RHOD_ThiF 332 457 - -
Trre9g05001 457 FunFam Adenylyltransferase and sulfurtransferase MOCS3 57 306 - -
Trre9g05001 457 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 60 315 IPR045886 -
Trre9g05001 457 FunFam Adenylyltransferase and sulfurtransferase MOCS3 339 457 - -
Trre9g05001 457 Hamap Adenylyltransferase and sulfurtransferase MOCS3 [MOCS3]. 28 457 IPR028885 GO:0002143|GO:0004792|GO:0005829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05001 Trre-Chr9 55897820 55903050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05001 102 457 Sulfurtransferasese or Rhodanese AT5G55130 73.109 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05001 K11996 - gmx:100814736 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g05001 9 55897820 55903050 Trre9g05001 9 55897820 55903050 ECH