LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre9g04987	ATGGAAGAAAAAGATTTTACATCAAAACTTTTAGGGTTTGTTGGCAATGAGTGTATAGTCCTTGAGTCCTTGCTACTTATCAATGATCCATTGTATGGTGCTCTTCATTCAAAGAACAATGTTCCTATTCCTATTTCTCAAAGCAACCTTCAAGTTTTTAGGGAAATCGTCGCAATGAAGAAAGTAAGAAGTAATCGATCAAAGAGAATCAATTACAACATTCTTTCTTCAAAGTTTAAGGAGGTTACTTGTTGTACAAGCAACAACAAAGATGTTGGAAAAATAATAGTCAAGAAAAGAAAAACAATGGGTGAGGGATCAAGAAATCCGTCGAAGAAATTCAAGATTAAGCGGGAGAAAGAAGACGTGCAAGAAGAGCAACCCGATCTTCCATTGGCGTTTAAAGAAAGAATCGAACAACTGAAAGGTATTGATGTGAAGTTGGTGATCCAGAAAAGATTGACCATGACTGATTTGACGCGAAACCACGGTCGATTATCCGTTCCAATAGGTCAAATTAAGATCGAAGAGAGTAGTCTTTTGACACAAGAGGAGGGAATGTCTTTGGATTATGTGCCTCAAAAGAACGGGAGCAAGAAGCTTGATGGTATGTCTGTATCTATGTTGGATCCTAATCTTAAACTTTGGGATAAAATGTGCTTCAAGAAGTGGAAAATGGGAAAATCTGAGGTCTACAATATCACTGGTGGATGGTACAAACTTGTAGAAGAAAACCATTTGAAAGAAGATCAAAAGATTCAACTTTGGTCTTTTAAAAGAGACAATCATCTCAATTTCGCACTCGTCAAACTTTAG	816	0.3676	MEEKDFTSKLLGFVGNECIVLESLLLINDPLYGALHSKNNVPIPISQSNLQVFREIVAMKKVRSNRSKRINYNILSSKFKEVTCCTSNNKDVGKIIVKKRKTMGEGSRNPSKKFKIKREKEDVQEEQPDLPLAFKERIEQLKGIDVKLVIQKRLTMTDLTRNHGRLSVPIGQIKIEESSLLTQEEGMSLDYVPQKNGSKKLDGMSVSMLDPNLKLWDKMCFKKWKMGKSEVYNITGGWYKLVEENHLKEDQKIQLWSFKRDNHLNFALVKL	271

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre9g04987	271	Pfam	B3 domain-containing protein At2g31720-like	139	243	IPR005508	GO:0003677
	Trre9g04987	271	MobiDBLite	consensus disorder prediction	101	121	-	-
	Trre9g04987	271	SUPERFAMILY	DNA-binding pseudobarrel domain	149	267	IPR015300	-
	Trre9g04987	271	ProSiteProfiles	Rhodanese domain profile.	225	250	IPR001763	-
	Trre9g04987	271	Gene3D	-	141	268	IPR015300	-
	Trre9g04987	271	PANTHER	B3 DOMAIN PLANT PROTEIN-RELATED	55	271	IPR005508	GO:0003677

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre9g04987	Trre-Chr9	55809080	55809895	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre9g04987	134	268	B3 DNA Binding Superfamily	AT1G05930	25.352	1.80e-07	49.7

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre9g04987	-		-	tpra:123890888	421.394

Showing 1 to 1 of 1 entries