Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04986 ATGGAACAAGAGCAACCGAGTCTTCCATTGGCGTTTAAAGAAAGGATTGAACAAATGAATGGTTTTGATGTGAACCTGGTGATCCAGAAAGAATTGACCATGAATGACGTAAAAGGAGAAAACAACCGATTTAGTATGCCAATAGATAAGATGATCGAAGAGAGTATTTTTTTGACACCATTAGAGAGATTGTCTTTGAATATCCATGTATTTATGTTGGATCATAATCTTAGAATTTGGGATGACATGTATCTTAAGAAGTGGAAATTGGGAAAATCCGAGGTTTACAAGGTTTACAATATTACTGGTGGATGGTACAAACTTGTAGTCCAGAACGATTTGAAAGAATCTCAAAAGATACAACTTTGGTCGTTTAGATGCAACAACAATCGTCTCAATTTTGCACTCGTCAAACTTTAG 420 0.3548 MEQEQPSLPLAFKERIEQMNGFDVNLVIQKELTMNDVKGENNRFSMPIDKMIEESIFLTPLERLSLNIHVFMLDHNLRIWDDMYLKKWKLGKSEVYKVYNITGGWYKLVVQNDLKESQKIQLWSFRCNNNRLNFALVKL 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04986 139 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 3 139 IPR005508 GO:0003677
Trre9g04986 139 Pfam B3 domain-containing protein At2g31720-like 14 109 IPR005508 GO:0003677
Trre9g04986 139 Gene3D - 18 137 IPR015300 -
Trre9g04986 139 SUPERFAMILY DNA-binding pseudobarrel domain 25 131 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04986 Trre-Chr9 55805815 55806234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04986 12 136 B3 DNA Binding Superfamily AT1G05930 28.676 1.95e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04986 - - tpra:123890878 164.081