Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04977 ATGAAGCGGGTTCAAGTTGGAAAAATGCTTCAGCAATTGCCTGAATATGTACGGGAACAATCTGTAAATACTTTGTATTTAGAAGCACAATGTAGGATTCAAGATCCTGTTTATGGATGTGTTGGGATTGTCTCTAAATTGTATCAACAAATCCATGATGCAGAAGCTGAGCTGGCCAAAATCCAAACTCAAATTGCATGTCATAAGCTCAAAAATCAAGAATTTGAAGTTGAATCAAATTTCAATGTCTTGTCCACAGTTGATGATGAATCAAATTTGAACTTTTTGCCACCACAAAGTAATAGCATGGAGCAGTGGTTTGATCATGTTCCTAATTTGTTCAATTAA 348 0.3534 MKRVQVGKMLQQLPEYVREQSVNTLYLEAQCRIQDPVYGCVGIVSKLYQQIHDAEAELAKIQTQIACHKLKNQEFEVESNFNVLSTVDDESNLNFLPPQSNSMEQWFDHVPNLFN 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04977 115 ProSiteProfiles LOB domain profile. 1 65 IPR004883 -
Trre9g04977 115 Coils Coil 44 71 - -
Trre9g04977 115 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 79 - -
Trre9g04977 115 Pfam Lateral organ boundaries (LOB) domain 5 62 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04977 Trre-Chr9 55739189 55739985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04977 6 66 AS2 family AT3G26660 55.738 1.23e-18 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre9g04977 LOB 8.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04977 - - lang:109328513 144.821