Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04971 ATGGAGAACTCTACAATTCATTTGTCTTTGGAGTATCTTAAGGCAGTAGAAGTTGAATTTCAACATGATAGCATCAAGTTAGATGTGTTTAAAAAAATGCTAAAAGATTTCAACGATGAAAAAATTGATGTAGGAGATGTCAAAGTAAGAGTGAAGGGATTGTTTAAAGATCATACAAATTTAATTTCAGGATTCAATATCTTCTTGCCCAAGGAACATCAAATCACTCCTAACTTAGACTATGAAGATGCATCGGCGTTTACAAAGGCAATAATGGACGCGTTTCAAGATAAGAAAGAAACTCATGAGAAGTATTTAGATCTAATTTTTGAATGGAAGTACAAAAGAGTTGGTAGATCAGTTGATATAAAAAGTATCATGGCAAGAATGAAGGAGTTGCTTAAAGAGCATATAGATTTATATTTTATATTTGAAGCATTCGTGTCACAAACTGAATATTCCGCGACAACCGGTAATCAATTCAAAGTTGATGATGACTCTAAGAAGAAAATCATGAAAAGAGAGGCGGAGAATGAAAGATCAAACAAATCGTCGAAGAAACTCAAGATCAACAACAACAATAATAATGATAATGATAATGTCCAGCTACAAGAGCGACCTGAGCTTCCGTTGGCGTTTAAAGAAATGATTGAACAGTTGGAAGGTAGTGATGTGATGTTGGTGATGCAAAAGGAACTGACCAAGACTGACTTGAACAAAAACAACTGTCGGTTGTCCATCCCAAAAAGTGAATGTATTAACTGGAATTTCTTAAATTCTGAGGAGAAATCGTCCTTGGATTATGTGCAAGGGAAACACGAGGATTGTCATACTATGTCTGTGTCTGTGTTGGATCCTCGTGTTACACTCTACGAAGGCATGCGCTTAACGAAGTGGAAAATGGTGACATCTGAAATTTACAATATCACACATGAATGGTACAAACTCGTAGAGGAAAATAAATTGAAAAAAGGCCAAAAGGTGCAACTCTGGTCTTTTAGAAGTCATCGACATCTTTGCTTTGCACTCGTCAAGCTCTAG 1041 0.3593 MENSTIHLSLEYLKAVEVEFQHDSIKLDVFKKMLKDFNDEKIDVGDVKVRVKGLFKDHTNLISGFNIFLPKEHQITPNLDYEDASAFTKAIMDAFQDKKETHEKYLDLIFEWKYKRVGRSVDIKSIMARMKELLKEHIDLYFIFEAFVSQTEYSATTGNQFKVDDDSKKKIMKREAENERSNKSSKKLKINNNNNNDNDNVQLQERPELPLAFKEMIEQLEGSDVMLVMQKELTKTDLNKNNCRLSIPKSECINWNFLNSEEKSSLDYVQGKHEDCHTMSVSVLDPRVTLYEGMRLTKWKMVTSEIYNITHEWYKLVEENKLKKGQKVQLWSFRSHRHLCFALVKL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04971 346 Gene3D Paired amphipathic helix 9 70 IPR036600 GO:0006355
Trre9g04971 346 Gene3D Paired amphipathic helix 73 150 IPR036600 GO:0006355
Trre9g04971 346 ProSiteProfiles PAH domain profile. 77 151 IPR003822 GO:0006355
Trre9g04971 346 SUPERFAMILY PAH2 domain 77 149 IPR036600 GO:0006355
Trre9g04971 346 Pfam Paired amphipathic helix repeat 30 69 IPR003822 GO:0006355
Trre9g04971 346 Gene3D - 219 343 IPR015300 -
Trre9g04971 346 SUPERFAMILY PAH2 domain 3 72 IPR036600 GO:0006355
Trre9g04971 346 Pfam B3 domain-containing protein At2g31720-like 215 318 IPR005508 GO:0003677
Trre9g04971 346 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 124 346 IPR005508 GO:0003677
Trre9g04971 346 ProSiteProfiles PAH domain profile. 1 72 IPR003822 GO:0006355
Trre9g04971 346 SUPERFAMILY DNA-binding pseudobarrel domain 228 344 IPR015300 -
Trre9g04971 346 MobiDBLite consensus disorder prediction 173 203 - -
Trre9g04971 346 Coils Coil 173 193 - -
Trre9g04971 346 MobiDBLite consensus disorder prediction 187 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04971 Trre-Chr9 55715317 55716434 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04971 1 76 WRKY Transcription Factor Family AT4G12020 44.737 1.17e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre9g04971 DUF313 2.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04971 - - tpra:123920509 250.366