Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04970 ATGGAGTTCTCTAGTAAACGTGATGATGCATTCGCTTATCTTAAGCGAGTAGAAGTTGCATTTCAACGTAATAGGATCAAGTATGAAGTGTTTATAGAAATTTTAGAAGATTATAAGGCTGGAAAAATTGATATAGGAGGTATGAAAGTAAGAGTCAAGGGATTGTTTCAAGAGCATGCAAATTTAATTTCCGGATTTAATACCTTCATGCCCAAGGAACATCAACTCACATCTAAGGTAGAGCTTGAAGATGGATTGGCGTTTTGTAAGGCAGTAAAAGACGCGTTTCAAGATAAAAGAGAAAGTTTTGATGAGTATTTAAATATTATGAAGGATTGGAAGCACGAAAGAGTTGATATAACAAGTTTGGTGGCGCGAATGAAGGAGTTGCTTAAAGAGAATACCGATTTAATTTTTGGATTCAATATCTTCCTGCCAACTGAATATCAAATCACAATTCCCGGGACGAATGGTAATGAATTCAAAGGTGATGATTCTCGTGTTCGCTGTTCAAATAATAGCGAGTACTACGCTGCTGTTTCAGAATGCAAAGATGATTTTAAGAGAAAAAGAAGCAAGCGATCAAAGAGACGAGATTTTAGTAGCATTATTGAATATGTTATCGATGAATCAAAGAATCGCGAGGATATTGTTGTTTGTGGATACAATGAAGGTTTTGATCAGAAATTAACACCAAAGAAAAGAAAAAGATCAAATACATCACATAGAGTTGAGTTTGAAATTCTTGATAGTGATGAGGATTCTAAGATCACGAAAAGAGAAGTGAAGAATGAAAGATCAAACAAATCATGGAAGAAACGCAAGATCAACAATGACCAGATACAAGAGCGGCCTGAGCTTCCGTTGGCGTTTAAAGAAAAGATTGAAGAGTTGAAAGGTAGTGATGTGATGTTGGTGATTCAAAAGGAACTGACCAAGACTGACATGAAAAAAAACAACGGTCGGTTGTCCATCCCAGTAAAACAAGTAATTAACGAGAAATTTCTAGAACCAAATGAGAAATCATTCTTGCATTATCGTAAAGAGGGACGCAAGAGGCGTATTGGTATATCCGTGTCTGTGTTGGATCCAAGTCTTGAACTCTGGGAACGTATGTCCATCAAGAAGTGGAGAATGGTGAACTCTGACACCTACAATATCACAGACGATTGGTACAAACTCGTAGAGAAAAATAATTTGAAAGAAGGCCAAAAGGTGCAAGTCTGGTCTTTTAGAAGGCATCGACAGCTCTGCTTTGCACTCGTCAAGCTCTAA 1275 0.371 MEFSSKRDDAFAYLKRVEVAFQRNRIKYEVFIEILEDYKAGKIDIGGMKVRVKGLFQEHANLISGFNTFMPKEHQLTSKVELEDGLAFCKAVKDAFQDKRESFDEYLNIMKDWKHERVDITSLVARMKELLKENTDLIFGFNIFLPTEYQITIPGTNGNEFKGDDSRVRCSNNSEYYAAVSECKDDFKRKRSKRSKRRDFSSIIEYVIDESKNREDIVVCGYNEGFDQKLTPKKRKRSNTSHRVEFEILDSDEDSKITKREVKNERSNKSWKKRKINNDQIQERPELPLAFKEKIEELKGSDVMLVIQKELTKTDMKKNNGRLSIPVKQVINEKFLEPNEKSFLHYRKEGRKRRIGISVSVLDPSLELWERMSIKKWRMVNSDTYNITDDWYKLVEKNNLKEGQKVQVWSFRRHRQLCFALVKL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04970 424 Pfam Paired amphipathic helix repeat 27 69 IPR003822 GO:0006355
Trre9g04970 424 Pfam Paired amphipathic helix repeat 103 145 IPR003822 GO:0006355
Trre9g04970 424 SUPERFAMILY PAH2 domain 78 149 IPR036600 GO:0006355
Trre9g04970 424 Gene3D Paired amphipathic helix 9 71 IPR036600 GO:0006355
Trre9g04970 424 Gene3D Paired amphipathic helix 84 146 IPR036600 GO:0006355
Trre9g04970 424 ProSiteProfiles PAH domain profile. 78 148 IPR003822 GO:0006355
Trre9g04970 424 SUPERFAMILY DNA-binding pseudobarrel domain 305 421 IPR015300 -
Trre9g04970 424 FunFam Paired amphipathic helix protein Sin3 9 71 - -
Trre9g04970 424 SUPERFAMILY PAH2 domain 6 73 IPR036600 GO:0006355
Trre9g04970 424 Pfam B3 domain-containing protein At2g31720-like 296 397 IPR005508 GO:0003677
Trre9g04970 424 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 173 424 IPR005508 GO:0003677
Trre9g04970 424 ProSiteProfiles PAH domain profile. 1 73 IPR003822 GO:0006355
Trre9g04970 424 Gene3D - 304 424 IPR015300 -
Trre9g04970 424 FunFam Paired amphipathic helix protein Sin3 84 146 - -
Trre9g04970 424 CDD B3_DNA 307 419 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04970 Trre-Chr9 55712913 55714278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04970 9 77 WRKY Transcription Factor Family AT4G12020 43.478 1.46e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre9g04970 DUF313 1.1e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04970 - - tpra:123920509 603.979