Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04968 ATGCCCTCAGCTCAAGATCCATTTTATGTTGTCAAACAAGATATTCAAGATTCTATTGATAGGTTGCAATCTAATTTTCACCAATGGGAAAATACTTCTGATAGTGGGGAGCATTTGAACCTTTCAAAGGAAGTTCTTGCTGCTTGTGGAAGTATTGAGTGGCAGGTGGATGAATTGGACAAAGCAATTTCTGTAGCATCTAGAGATCCTTCTTGGTATGGCATTGATGAAGTGGAGATTGAAAACAGGAGGAGGTGGACCAGCAATGCTCGCACCCAGGTTCGCACAGTTAAGAAAACAGTGGAAGCTGGAAAGGGATCAACTCATGCTAGTTTAAATGGGATGCATAGGGAATTAATGAGGCTTCCGGATTCTCATCAAAGTACGTCCAAGTCTAACCAATATTCCGCTGGGGATAATGATGATTTCATAGAATCAGAATCAGATAGGCAAATGCTTCTTATAAAAAAGCAGGATGAGGAGTTAGATGAGCTTAGTTTAAGTGTACAAAGAATCGGAGGTGTTGGACTTACGATACATGAAGAGCTCCTCGGCCAGGAAAAAATTCTTGATGAACTTGGCAATGAGATGGACAGTACATCCAATCGTCTAGATTTTGTCCAAAAAAGAGTGGCGATGGTGATGAAGAAGACGAGTGCAAAGGGTCAGATCATGATGATATGTGGTTTGCTGGCCCTGTTCATTTTCCTTTTTATCTTGGTATTCTTCACCTAG 735 0.4109 MPSAQDPFYVVKQDIQDSIDRLQSNFHQWENTSDSGEHLNLSKEVLAACGSIEWQVDELDKAISVASRDPSWYGIDEVEIENRRRWTSNARTQVRTVKKTVEAGKGSTHASLNGMHRELMRLPDSHQSTSKSNQYSAGDNDDFIESESDRQMLLIKKQDEELDELSLSVQRIGGVGLTIHEELLGQEKILDELGNEMDSTSNRLDFVQKRVAMVMKKTSAKGQIMMICGLLALFIFLFILVFFT 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04968 244 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Trre9g04968 244 CDD SNARE_NTD_AtSYP61-like 5 102 - -
Trre9g04968 244 SUPERFAMILY t-snare proteins 5 101 IPR010989 GO:0016020|GO:0016192
Trre9g04968 244 FunFam syntaxin-61 isoform X1 155 216 - -
Trre9g04968 244 Coils Coil 190 210 - -
Trre9g04968 244 FunFam Syntaxin 10 3 104 - -
Trre9g04968 244 Coils Coil 12 32 - -
Trre9g04968 244 Pfam SNARE domain 189 240 IPR000727 -
Trre9g04968 244 PANTHER GOLGI SNARE BET1-RELATED 126 241 - -
Trre9g04968 244 SUPERFAMILY SNARE fusion complex 150 214 - -
Trre9g04968 244 Gene3D - 2 104 - -
Trre9g04968 244 CDD SNARE_Qc 155 212 - -
Trre9g04968 244 SMART tSNARE_6 147 214 IPR000727 -
Trre9g04968 244 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 152 214 IPR000727 -
Trre9g04968 244 Gene3D - 159 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04968 Trre-Chr9 55696476 55700538 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04968 55 244 SNARE and Associated Proteins AT1G28490 69.430 1.05e-92 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04968 K08500 - gmx:100793612 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01365 5 9547737 9550649 Trre9g04968 9 55696476 55700538 PCT