Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04965 ATGGGCAGTTGTCTCAGTAAAAAAAGACCAGATACAAATACAATCTTAGGTAAACAATTTGAAGATATAAGAAAAATTTACAAATTTGGTAAAGAATTAGGGAGAGGAGAATTTGGTGTGACTTATCTATGCACTGAGAAATCAACTAGTTTGAAATATGCTTGCAAGTCAATTTCAAAGAAGAATTTTGTTAGTAAAGATGAAAAAAAAGAAGAGATAAAGAGGGAGATTCAAATCATGCAGCATATGAGTGGAAAACCAAATATTGTTGTGTTTAAAGGTGCTTATGAGGATAAACATTCAGTTCATATTGTTATGGAACTTTGTATTGGTGGTCAGCTTTTAGATAGGATTACTGCTAAAAGGAGATATAGTGAAAAAGATGCAGCTTCAATTTGCAGACAAATTGTTAATATTGTTCATATTTGTCATTCTATGGGCATCATGCATAGAGATTTGAAGCCTGGAAATCTCTTGTTGTCTAGTAACGATGATAAGGCTACTATCGTGGCCACTGATTTTGGCTTCTCGGTTTTCATCGAAGAAGGAAAGGTATATACCGATATAGTTGGCAGTGTATATTACATTGCACCAGAAGTTCTTCGTCGGAAATATGGGAAAGAAATAGATATATGGAGTGCAGGAGTTATTTTATATATCTTAATTTGTGGTGTGCCTCCATTTTGTGCAGAGACGCAAGAGGGAATATTCGAAGCCATATTGCAAGGTCATATCGACTTTTATTGTCCTCCATGGCCAATCATATCAAAAAGCGCTAAGGACCTTGTTCGTAAGATGCTTACACAAGATCCAAAGAAACGCATTACTGCTTCTCAGGTTCTAGAGCATCCATGGATTAAAGAAGGTGGAAATGCTTAG 879 0.3549 MGSCLSKKRPDTNTILGKQFEDIRKIYKFGKELGRGEFGVTYLCTEKSTSLKYACKSISKKNFVSKDEKKEEIKREIQIMQHMSGKPNIVVFKGAYEDKHSVHIVMELCIGGQLLDRITAKRRYSEKDAASICRQIVNIVHICHSMGIMHRDLKPGNLLLSSNDDKATIVATDFGFSVFIEEGKVYTDIVGSVYYIAPEVLRRKYGKEIDIWSAGVILYILICGVPPFCAETQEGIFEAILQGHIDFYCPPWPIISKSAKDLVRKMLTQDPKKRITASQVLEHPWIKEGGNA 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04965 292 ProSitePatterns Protein kinases ATP-binding region signature. 33 56 IPR017441 GO:0005524
Trre9g04965 292 Gene3D Phosphorylase Kinase; domain 1 17 109 - -
Trre9g04965 292 Gene3D Transferase(Phosphotransferase) domain 1 111 292 - -
Trre9g04965 292 PANTHER SERINE/THREONINE-PROTEIN KINASE 21 291 - -
Trre9g04965 292 CDD STKc_CAMK 27 285 - -
Trre9g04965 292 FunFam Calcium-dependent protein kinase 5 114 292 - -
Trre9g04965 292 FunFam Calcium-dependent protein kinase 1 29 113 - -
Trre9g04965 292 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Trre9g04965 292 Pfam Protein kinase domain 27 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04965 292 ProSiteProfiles Protein kinase domain profile. 27 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04965 292 SMART serkin_6 27 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04965 292 SUPERFAMILY Protein kinase-like (PK-like) 15 288 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04965 Trre-Chr9 55683367 55684807 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04965 12 292 EF-hand Containing Proteins AT3G20410 70.463 6.58e-152 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre9g04965 Pkinase 1.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04965 K13412 - cit:107176513 442.58