Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04963 ATGGGTGCTTGTCTCAGTAAAAAAGAATCAGAGCTAGATCATAGACATTTTGGTGTTTCTGGTTTGCATAATCACAAGAATCATGAACCCTATATGAATCAATCAAAAGCTCATTTTCAACAACCTTACCAATTACCTAATAAACATGATCCAAAGCCAAAACCTATTGTCAAAAGACCAGATTCAAACACAATCCTAGGTGTACAACTTGATGTTAAAAGACCAGACACAAACAAAATCCTAGGTAAGCAATTTGAAGATGTAAGAAAAATTTACACACTTGGGGAAGAATTAGGGAGAGGAAAATGTGGTGTAACTTATCTATGCACTGAGAAATCAACTGGTTTGAAATATGCTTGCAAGTCAATTTCAAAGAGAAAATTTGTTAGTAAAGCTGAAAAAGAAGAGATAAAGAGGGAGATACAAATCATGCAACATATGAGTGGAAAACCAAATATTGTTGAGTTTAAAGGTGCTTATGAGGATAAAAATTCAGTTCATGTTGTCATGGAACTTTGTGCTGGTGGTCAGCTTTTTGATAGGATTACTGCTAAAGGGAGATATAGTGAAAGAGATGCAGCTTCAATTTGCAGACAAATTGTTAATATTGTTCATATTTGTCATTTTATGGGTGTGATGCATAGAGATTTGAAGCCTGAAAATCTCTTGTTGTCTAGTGAGGATGATAAGGCTACTATCATTGCCACTGATTTTGGCTTGTCGGTTTTCATCGAAGAAGGAAAGGTATATAATGATATAGTTGGCAGTGCATATTACGTTGCACCAGAAGTTCTACGACAGAAATATGGGAAGGAAATAGATATATGGAGTGCAGGAGTTATTTTGTATATCTTACTTTGCGGCGTGCCTCCATTTTGGGCAGAGATGCAAAAGGGGATATTCGAAGCCATATTGCAAGGTCATATTGACTTTTATAGTCCTCCATGGCCAATCATATCAAACAGCGCTAAGGACCTTGTTCGTAAGATGCTTACACAAGATCCAAAGAAACGTTTTACTGCTTCTCAGGTTCTAGAGCATCCATGGATTAAAGAAAGTGGAAATGCTTCTGACAAGCCAATAAACAGTGCATAA 1095 0.3644 MGACLSKKESELDHRHFGVSGLHNHKNHEPYMNQSKAHFQQPYQLPNKHDPKPKPIVKRPDSNTILGVQLDVKRPDTNKILGKQFEDVRKIYTLGEELGRGKCGVTYLCTEKSTGLKYACKSISKRKFVSKAEKEEIKREIQIMQHMSGKPNIVEFKGAYEDKNSVHVVMELCAGGQLFDRITAKGRYSERDAASICRQIVNIVHICHFMGVMHRDLKPENLLLSSEDDKATIIATDFGLSVFIEEGKVYNDIVGSAYYVAPEVLRQKYGKEIDIWSAGVILYILLCGVPPFWAEMQKGIFEAILQGHIDFYSPPWPIISNSAKDLVRKMLTQDPKKRFTASQVLEHPWIKESGNASDKPINSA 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04963 364 ProSiteProfiles Protein kinase domain profile. 92 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04963 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Trre9g04963 364 Pfam Protein kinase domain 92 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04963 364 Gene3D Phosphorylase Kinase; domain 1 94 178 - -
Trre9g04963 364 CDD STKc_CAMK 92 349 - -
Trre9g04963 364 PANTHER SERINE/THREONINE-PROTEIN KINASE 86 360 - -
Trre9g04963 364 SUPERFAMILY Protein kinase-like (PK-like) 92 353 IPR011009 -
Trre9g04963 364 FunFam calcium-dependent protein kinase 1 178 357 - -
Trre9g04963 364 FunFam Calcium-dependent protein kinase 1 94 177 - -
Trre9g04963 364 Gene3D Transferase(Phosphotransferase) domain 1 179 363 - -
Trre9g04963 364 SMART serkin_6 92 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04963 Trre-Chr9 55678690 55680589 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04963 77 364 EF-hand Containing Proteins AT3G20410 76.042 3.24e-169 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre9g04963 Pkinase 9.3e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04963 K13412 - gmx:100798651 531.946