Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04962 ATGGGTGGTTGTATCAGTAAAAGAGAATCAGAACCACAACAAAGACATATTGCTGTTTCTGCTAGGCAGAATCATAATCATAATCACAATCATAATCACAATCGCAATCATAATCACAATCACAAGAATCATGCCCCAAAATCCCCTTTTCAACAACCTAACAAACATGCCCCAAGAAGTCCAAATCCAAATGTTCAAAGACCAGTTACAAACACAATCTTAGGTAAAAAATTTGAGGATGTGAAAGAAAATTACACACTTGGTAAAGAATTAGGGAGAGGACAATTTGGTGTGACATATCTATGTACTGAGAATTCAACAGGTTTGAAATATGCATGCAAATCAATTTCAAAAAGGAAACTTGTTAGTAAAGCTGATAAGGAAGATATAAAAAGAGAGATACAAATCATGCAACATATGAGTGGACAATCAAATATTGTTGAGTTTAAAGGTGCTTATGAAGATAAAAATTCAGTTCATGTTGTTATGGAACTTTGTGCTGGTGGTGAACTTTTTGATAGGATTATTGCTAAAGGGAAATATAGTGAAAGAGCTGCAGCTTCAATTTGTAGACAAATTGTTAATGTTGTTCATATTTGTCATTTTATGGGCGTCATGCATAGAGATTTGAAGCCTGAAAATTTCTTGTTGTCTAGTAAGGATGATAAGGCTACTATCAAAGCCACTGATTTCGGCTTGTCGGTTTTCATCGAAGAAGGAAAGGTACATCGAGATGTAGTTGGAAGTGCTTATTACGTTGCGCCGGAAGTCCTACGTCGTAAATATGGGAAGGAAATAGATATATGGAGTGCAGGAGTTATATTGTATATCTTACTTTGCGGTGTGCCTCCATTTTGGGCAGAGACGGAAAAGGGAATATTTGATGCCATATTGTACGGTCATATTGACTTTGAAAGTCGTCCATGGCCAAGCATATCAAACAGTGCTAAGGACCTTGTTACTAAGATGCTTACACAAGATCCAAAGAAACGCATTACTGCTTCTCAGGCTCTAGAGCATCCGTGGCTTAAAGAAGGTGGAAATGCTTCTGACACGCCAATAGACAGCGCAGTACTTTCCAGAATGAAGCAATTCAGAGCAATGAATAAACTAAAAAAACTCGCCCTCAAGGTCATTGCTGAAAATCTTTCTTCAGAAGAAATTCAAGGTTTGAAGGCAATGTTTACAAACATGGACACAGACAAAAGTGGTACAATCACATATGAGGAGTTGAGGGCCGGATTGCAAAGACTCGGTTCAAAGCTTACTGAAGACGAAGTGCGGCAGCTTATGGAAGCTGCTGATGTAGATGGAAATGGATCAATTGACTACATAGAATTCATCACCGCAACAATGCATAGACATAGGTTAGAAAGAGATGAGCATCTTTACAAGGCCTTCCAATATTTCGATAAAGACAGTAGCGGTTTCATTACAAGAGATGAACTGGAAACAGCTATGAAGGAACATGGTATGGGCGACGAAGAGACAATCAGGGAAATTATATCCGAAGTTGATACCGATAATGATGGTAGAATTAACTATGAAGAATTTTGTGCAATGATGAGGAGTGGAGTCCAACAACAAGGCACGCTATTCTAA 1602 0.3814 MGGCISKRESEPQQRHIAVSARQNHNHNHNHNHNRNHNHNHKNHAPKSPFQQPNKHAPRSPNPNVQRPVTNTILGKKFEDVKENYTLGKELGRGQFGVTYLCTENSTGLKYACKSISKRKLVSKADKEDIKREIQIMQHMSGQSNIVEFKGAYEDKNSVHVVMELCAGGELFDRIIAKGKYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDDKATIKATDFGLSVFIEEGKVHRDVVGSAYYVAPEVLRRKYGKEIDIWSAGVILYILLCGVPPFWAETEKGIFDAILYGHIDFESRPWPSISNSAKDLVTKMLTQDPKKRITASQALEHPWLKEGGNASDTPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSSEEIQGLKAMFTNMDTDKSGTITYEELRAGLQRLGSKLTEDEVRQLMEAADVDGNGSIDYIEFITATMHRHRLERDEHLYKAFQYFDKDSSGFITRDELETAMKEHGMGDEETIREIISEVDTDNDGRINYEEFCAMMRSGVQQQGTLF 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04962 533 MobiDBLite consensus disorder prediction 25 73 - -
Trre9g04962 533 ProSiteProfiles EF-hand calcium-binding domain profile. 494 528 IPR002048 GO:0005509
Trre9g04962 533 CDD STKc_CAMK 84 342 - -
Trre9g04962 533 FunFam Calcium-dependent protein kinase 1 351 526 - -
Trre9g04962 533 ProSitePatterns EF-hand calcium-binding domain. 471 483 IPR018247 -
Trre9g04962 533 FunFam calcium-dependent protein kinase 1 171 350 - -
Trre9g04962 533 Pfam EF-hand domain pair 391 451 IPR002048 GO:0005509
Trre9g04962 533 Pfam EF-hand domain pair 461 523 IPR002048 GO:0005509
Trre9g04962 533 ProSiteProfiles EF-hand calcium-binding domain profile. 422 457 IPR002048 GO:0005509
Trre9g04962 533 MobiDBLite consensus disorder prediction 26 44 - -
Trre9g04962 533 SUPERFAMILY EF-hand 382 522 IPR011992 -
Trre9g04962 533 CDD EFh 465 523 IPR002048 GO:0005509
Trre9g04962 533 PANTHER SERINE/THREONINE-PROTEIN KINASE 78 518 - -
Trre9g04962 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Trre9g04962 533 MobiDBLite consensus disorder prediction 45 71 - -
Trre9g04962 533 Gene3D Transferase(Phosphotransferase) domain 1 171 350 - -
Trre9g04962 533 Gene3D Phosphorylase Kinase; domain 1 87 170 - -
Trre9g04962 533 ProSitePatterns EF-hand calcium-binding domain. 435 447 IPR018247 -
Trre9g04962 533 Gene3D - 351 526 - -
Trre9g04962 533 FunFam Calcium-dependent protein kinase 1 87 170 - -
Trre9g04962 533 SUPERFAMILY Protein kinase-like (PK-like) 82 351 IPR011009 -
Trre9g04962 533 ProSiteProfiles EF-hand calcium-binding domain profile. 458 493 IPR002048 GO:0005509
Trre9g04962 533 ProSitePatterns EF-hand calcium-binding domain. 506 518 IPR018247 -
Trre9g04962 533 SMART serkin_6 85 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04962 533 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Trre9g04962 533 ProSiteProfiles Protein kinase domain profile. 85 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04962 533 CDD EFh_PI-PLC 391 524 - -
Trre9g04962 533 SMART efh_1 462 490 IPR002048 GO:0005509
Trre9g04962 533 SMART efh_1 390 418 IPR002048 GO:0005509
Trre9g04962 533 SMART efh_1 426 454 IPR002048 GO:0005509
Trre9g04962 533 SMART efh_1 497 525 IPR002048 GO:0005509
Trre9g04962 533 ProSiteProfiles EF-hand calcium-binding domain profile. 386 421 IPR002048 GO:0005509
Trre9g04962 533 ProSitePatterns EF-hand calcium-binding domain. 399 411 IPR018247 -
Trre9g04962 533 Pfam Protein kinase domain 85 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04962 Trre-Chr9 55674012 55677735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04962 1 533 EF-hand Containing Proteins AT3G20410 73.140 0.0 817
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre9g04962 Pkinase 2.7e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04962 K13412 - gmx:100794852 861.677