Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04954 ATGAAAAGACCTAAATCAAAGGAATTTCGGAAGCAACAACGACTTTCAGAAGAAGATGAAATTAACCTCTTGAATTCATGGATTCAAGCTCAGAAACCAGACTCCGGTACCAACCCAATGTCTCTAACACCTCTCCCTAAAACCTCCCCCGTCGGTCGCCTTGCCGACAATACCTTCTCTCGCTACGCCGGTGTGGTGCGGTTTGAGCAGTTGCCATTGTCGAAGAAAACCAAAGACGCATTGCGAGCTTCGAAGTTCGTTTCCATGACTGATATTCAAAGAGCTTCTCTTCCTCATGCACTATGTGGCCGTGATGTTCTTGGCGCCGCCAAAACTGGCTCTGGAAAAACACTTGCTTTCATTATCCCTGTGTTGGAGAAACTGTATAGAGAGAGATGGGGACCTGAAGATGGGGTTGGTAGCATCATCATATCACCTACAAGAGAATTAGCTGATCAGATATTTGATGTCTTGAAGTCTATTGGGAAGTACCACGGTTTTAGTGCTGGCCTCCTCATTGGTGGTCGTAAGGATGTTGCCATGGAGAAAGAACGTGTTAACGAGCTCAACGTATTGATCTGCACACCCGGTCGCCTTCTACAACACATGGATGAAACTCCCAACTTTGACTGTTCACAGATGCAGGTGTTGGTACTAGATGAGGCTGATCGTATTCTTGATAGTGGATTCAAGAGGGAACTAAATGCAATCATCTCACAATTACCAAAGCGTAGACAAACCATGCTGTTCTCGGCTACTCAAACAAAGTCGGTTCAAGATCTCGCGAGATTGAGTTTGAAGGACCCAGAGTATCTAAGTGTGCACGAAGAGTCTGTGACTGCGACTCCTACTCTCTTGAAGCAAATTGTGATGACAGTTCCCTTGGATCAAAAGTTAGATATGTTATGGAGTTTCATAAAGACACATTTACAGTCAAAAACACTTGTCTTTCTATCTAGCTGTAAGCAGGTAAAATTTGTGTTTGAGGCATTTAAGAAACTTCACCCTGGTATACCGTTGAAGTGCCTTCATGGGAGGATGAAACAGGAAAAAAGAATGGCAATATATTCAGAGTTCTGTGAGAAGCGCTCAGTTCTCTTTTCAACTGATGTGGCTGCAAGAGGCCTTGATTTTAATAAGGCAGTTGACTGGGTTGTTCAGGTAGATTGTCCTGAGAATGTAGCATCTTACATACATCGAGTTGGCCGTACTGCTCGTTATAAATCTGATGGAAAGTCAGTTTTATTCCTATTGCCTTCAGAAACTCAGATGCTTGAAAAATTAAAAGCAGCAAAGGTTCCAGTACATTTGACCAAGCCAAGGAAAGAACTACTGCAACCAGTGTCCAGTTTGTTGGCATCTTTACTGGTCAAGTACCCAGAACTTCAGCAGCGGGCCCAAAGGGCATTTGTCACATACTTGAGGTCCATCCATCTCCAAAAGGATAAAGAGATCTTTGATGTTTTGAAACTTCCTATTGATGAGTATTCAGCATCATTAGGTCTACCAATGACCCCCAAAATCCGTTTTCTAAACCGGAATATTAAATCTAAAGCTGTGTCAACAAAATCAATCTTAGTTGAACCAGAGGATCGAAATAAGGAAAATATCTTGAAAGGTTCGAGAGAAAAGCCAGCCACAGTTGTTTTCAAAGATGAGGAAACTGAAAATGATCTTCTTCATGCGGCTGATACCTCAAATGAAGGCAACGTGACATCAACTGAAATTGGAGAATTAGTGCCAGCAATTCGTTTATCAAAGAAGAAAAAACTCAAGATTAACTTGCATAGACCACTGGGGAATCGGGTTGTATTTGATGATGAAGGCAACACACTTCCTCCATTAGCCACAATTGCTGACCCACAAAGTGGCAAAGGAACATCGCTAATTGATCCAGAACAAAAAGCTGAATACTATAAAAGGATGCGAGAGGATTTGAAGAAGGCAGACAAGGAAGACAAACTTGTAGAGCGTCAGCGACTTAGAGAAAAAAGAATTAAGCAGAAAATGAAATGGAAGGGTGGTGATGAGGAAGAAGAGGACAACCAAGATGATATCTCTGGGTCAGAAGGAGATGAAACGGTAGATAGACGGCATAAAAAGAGTAAAATATACTTTGATAGTGACAGTGATGAGGGTGAAAGAAAAGAAGCCTCAAGGGATCAATTGGCGGAGCAAGAAGCATTGGCTTTGAAGTTGTTACAATCCATGCAAGCATAG 2220 0.4221 MKRPKSKEFRKQQRLSEEDEINLLNSWIQAQKPDSGTNPMSLTPLPKTSPVGRLADNTFSRYAGVVRFEQLPLSKKTKDALRASKFVSMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEKLYRERWGPEDGVGSIIISPTRELADQIFDVLKSIGKYHGFSAGLLIGGRKDVAMEKERVNELNVLICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKRELNAIISQLPKRRQTMLFSATQTKSVQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMTVPLDQKLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQEKRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSDGKSVLFLLPSETQMLEKLKAAKVPVHLTKPRKELLQPVSSLLASLLVKYPELQQRAQRAFVTYLRSIHLQKDKEIFDVLKLPIDEYSASLGLPMTPKIRFLNRNIKSKAVSTKSILVEPEDRNKENILKGSREKPATVVFKDEETENDLLHAADTSNEGNVTSTEIGELVPAIRLSKKKKLKINLHRPLGNRVVFDDEGNTLPPLATIADPQSGKGTSLIDPEQKAEYYKRMREDLKKADKEDKLVERQRLREKRIKQKMKWKGGDEEEEDNQDDISGSEGDETVDRRHKKSKIYFDSDSDEGERKEASRDQLAEQEALALKLLQSMQA 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04954 739 Gene3D - 283 539 IPR027417 -
Trre9g04954 739 Pfam Domain of unknown function (DUF4217) 451 508 IPR025313 -
Trre9g04954 739 SMART helicmild6 325 408 IPR001650 -
Trre9g04954 739 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 456 IPR001650 -
Trre9g04954 739 Gene3D - 54 278 IPR027417 -
Trre9g04954 739 PANTHER RNA HELICASE 65 556 - -
Trre9g04954 739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 422 IPR027417 -
Trre9g04954 739 Pfam DEAD/DEAH box helicase 90 261 IPR011545 GO:0003676|GO:0005524
Trre9g04954 739 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Trre9g04954 739 MobiDBLite consensus disorder prediction 615 634 - -
Trre9g04954 739 Pfam Helicase conserved C-terminal domain 298 407 IPR001650 -
Trre9g04954 739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 274 IPR027417 -
Trre9g04954 739 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Trre9g04954 739 SMART DUF4217_3 447 510 IPR025313 -
Trre9g04954 739 MobiDBLite consensus disorder prediction 690 723 - -
Trre9g04954 739 CDD DEADc_DDX10 77 275 - -
Trre9g04954 739 Coils Coil 639 659 - -
Trre9g04954 739 ProSitePatterns EF-hand calcium-binding domain. 564 576 IPR018247 -
Trre9g04954 739 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Trre9g04954 739 SMART ultradead3 85 289 IPR014001 -
Trre9g04954 739 MobiDBLite consensus disorder prediction 666 723 - -
Trre9g04954 739 CDD SF2_C_DEAD 286 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04954 Trre-Chr9 55598015 55603107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04954 93 429 Eukaryotic Initiation Factors Gene Family AT1G72730 29.240 4.91e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04954 K14776 - gmx:100792106 1243.02