Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04946 ATGACTAACATACCTTTGTATTTGTATCCTTTCCTTGATACAACAACCAAGTTACCACATTTTGAGAATTTGAGACTTTCTAGTCTTGGAGTCATTGGTGCCTTGGTAAAGGTTAGCACCAAAGAAGTTATAGGTTTCTTTCTTGCAAGCGAGATAATTCCTTTGTGTTTGCGCAATATGGAAATCGGCAAAGAGCTAACAAAAACTGTTGCAACATTAATACTTGAGAAAATTTTGTTAGATGATGATGGTTTGGCTTGTGTTTGTGCTAGACCAGAGCGGTTTTTGGCCGTCGGTCGAGTTTTGGACAGGGTGTTGGAAAATCTTGAATATCAACCATCAAATCGTCTTTTGAAGCATCTAATTCCATGCTATTCTCGTTTGTCACAAAATCGTTGCAGGGCCGGCAATGCATTAAGAACCTCTCTTCCGAATGTGTTTGGAAAACCGACTTTCATTAACTCCCTTCGTGAAGACCCAGCAACTTGGATGTGGGCACAACAATTGTATGACAATGTTAGGGACAACCAAGTTCATCATGGAGGAGGAAACAATGATATTGTGGGATCGTCATCAGCATCCTAA 585 0.4017 MTNIPLYLYPFLDTTTKLPHFENLRLSSLGVIGALVKVSTKEVIGFFLASEIIPLCLRNMEIGKELTKTVATLILEKILLDDDGLACVCARPERFLAVGRVLDRVLENLEYQPSNRLLKHLIPCYSRLSQNRCRAGNALRTSLPNVFGKPTFINSLREDPATWMWAQQLYDNVRDNQVHHGGGNNDIVGSSSAS 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04946 194 Gene3D - 1 178 IPR011989 -
Trre9g04946 194 PANTHER UNCHARACTERIZED 2 177 IPR007216 GO:0006402|GO:0030014
Trre9g04946 194 Pfam Cell differentiation family, Rcd1-like 2 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04946 Trre-Chr9 55565935 55568273 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Trre9g04946 Rcd1 4.5e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04946 K12606 - gmx:100792752 206.453