Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04942 ATGACTAACATACCTTTGTATTTGTATCCTTTCCTTGATACAACAACCAAGTTACCACATTTTGAGAATTTGAGACTTTCTAGTCTTGGAGTCATTGGTGCCTTGGTAAAGGTTAGCACCAAAGAAGTTATAGGTTTCTTTCTTGCAAGCGAGATAATTCCTTTGTGTTTGCGCAATATGGAAATCGGCAAAGAGCTAACAAAAACTGTTGCAACATTAATACTTGAGAAAATTTTGTTAGATGATGATGGTTTGGCTTGTGTTTGTGCTAGACCAGAGCGGTTTTTGGCCGTCGGTCGAGTTTTGGACAGGGTGTTGGAAAATCTTGAATATCAACCATCAAATCGTCTTTTGAAGCATCTAATTCCATGCTATTCTCGTTTGTCACAAAATCGTTGGGCCGGCAATGCATTAAGAACCTCTCTTCCGAATGTGTTTGGAAAACCGACTTTCATTAACTCCCTTCGTGAAGACCCAGCAACTTGGATGTGGGCACAACAATTGTATGACAATGTTAGGGACAACCAAGTTCATCATGGAGGAGGAAACAATGATATTGTGGGATCGTCATCAGCATCCTAA 582 0.4003 MTNIPLYLYPFLDTTTKLPHFENLRLSSLGVIGALVKVSTKEVIGFFLASEIIPLCLRNMEIGKELTKTVATLILEKILLDDDGLACVCARPERFLAVGRVLDRVLENLEYQPSNRLLKHLIPCYSRLSQNRWAGNALRTSLPNVFGKPTFINSLREDPATWMWAQQLYDNVRDNQVHHGGGNNDIVGSSSAS 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04942 193 PANTHER UNCHARACTERIZED 2 176 IPR007216 GO:0006402|GO:0030014
Trre9g04942 193 Gene3D - 1 177 IPR011989 -
Trre9g04942 193 Pfam Cell differentiation family, Rcd1-like 2 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04942 Trre-Chr9 55553676 55556013 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Trre9g04942 Rcd1 6.8e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04942 K12606 - gmx:100792752 210.305