Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04905 ATGAGCTTCTTTTCATGTTGTAAGTTACAAGAGAAGACCACCAAGAACTCATTGAAGAAAAACATTAAGGATTATCATAATGTTTGTTTCAAATCTGATAATGGCAAACGGAAGTACATAGTAGAGGAAGAAAATGAAAGTGACGGAAAAGGAAATATTACCTCTAAGATATTTACTTACCATGAGCTATGTGTTGCAACTAAGAATTTTCATGTCCACAATATGGTTGGTGAAGGAGGCTTTGGAAGAGTTTACAAAGGGCGCATTAAAAACATGGATAATAAGGTTGTTGCGGTAAAGAAACTTAACAAAAATGGATTTCAAGGAAGCAGAGAATTTCTTGCAGAGGTTATGATTTTGAGTTTTTTGCACCACAATAACCTTGTCAACTTGGTAGGGTATTGTAGTGAAGGTGATCAAAGGATTTTGGTATATGAGTATATGGCAAATGGTTCTTTAGAAGATCACCTCTTTGAGTTACCTCCTGGCAAAAAGCCTTTGGATTGGCACACTAGAATGAAAATTGCAGAAGGTGCAGCGAGAGGACTTGAATACTTACACGCAGAAGCAAGTCCGCCGGTGATATACCGCGATTTCAAAGCATCAAACATATTATTAGATGAAAACTTCAATCCAAAATTATCAGATTTCGGACTTGCAAAACTTGGTCCGACCGGAGATAAAACACATGTGTCCACTAGGGTGATGGGAACTTATGGCTATTGTGCACCTGAGTATGCCTCAACGGGTCAATTGACTACAAAATCAGATGTTTATAGTTTTGGAGTAGTATTTTTAGAGATGATCACAGGGAGAAGAGTACTTGATTATTCAAGACCACCTGAAGAGGAAAACTTGGTCGTTTGGGCATTACCACTACTCAAAAACAAAAGAAAATATACATCATTGGTTGATCCATTGCTAAAAGGGAACTACCCAATGAGGGGCCTATACCAAGCACTAGCAATTGCATCAATGTGTCTATTGGAGGATGCTACTGCTAGACCTTTGATTGGTGATGTAGTCACAGCTCTTGGAGTTTTAGCAATGAGGCATGTACAAGTGGGAAAACAAAAACATACAAAAGAAAATTGTATTGAGCAAGGAGAATGCAGTTGA 1119 0.3798 MSFFSCCKLQEKTTKNSLKKNIKDYHNVCFKSDNGKRKYIVEEENESDGKGNITSKIFTYHELCVATKNFHVHNMVGEGGFGRVYKGRIKNMDNKVVAVKKLNKNGFQGSREFLAEVMILSFLHHNNLVNLVGYCSEGDQRILVYEYMANGSLEDHLFELPPGKKPLDWHTRMKIAEGAARGLEYLHAEASPPVIYRDFKASNILLDENFNPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYASTGQLTTKSDVYSFGVVFLEMITGRRVLDYSRPPEEENLVVWALPLLKNKRKYTSLVDPLLKGNYPMRGLYQALAIASMCLLEDATARPLIGDVVTALGVLAMRHVQVGKQKHTKENCIEQGECS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04905 372 ProSitePatterns Protein kinases ATP-binding region signature. 76 101 IPR017441 GO:0005524
Trre9g04905 372 SUPERFAMILY Protein kinase-like (PK-like) 52 345 IPR011009 -
Trre9g04905 372 FunFam Serine/threonine-protein kinase CDL1-like 41 147 - -
Trre9g04905 372 Pfam Protein kinase domain 70 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04905 372 FunFam Serine/threonine-protein kinase PBS1 148 364 - -
Trre9g04905 372 Gene3D Transferase(Phosphotransferase) domain 1 148 369 - -
Trre9g04905 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Trre9g04905 372 PANTHER OS07G0668900 PROTEIN 4 356 - -
Trre9g04905 372 CDD STKc_IRAK 76 345 - -
Trre9g04905 372 Gene3D Phosphorylase Kinase; domain 1 40 147 - -
Trre9g04905 372 ProSiteProfiles Protein kinase domain profile. 70 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04905 Trre-Chr9 55390136 55393060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04905 1 348 Glycoside Hydrolase AT3G07070 57.983 2.53e-149 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Trre9g04905 Pkinase 3.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04905 - - gmx:100798032 587.03