Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04896 ATGGAGTTCAATATACTTTTTTTGTTACTTCTCATTGTTTCTACTTCATTGATTTTCATCTCACACTTGGCTTCAGCTGCTACACCAAAGCTCAACACTCTAGAGGTGAAGGCATTGAAGGAAATAGGGAACAAGATTGGGAAAAAAGATTGGGATTTTGGAGTGGATCCTTGCAGTGGAAAAGCAAAATGGAATATTTCTGAATCTCCTAATAGAAAAGGCTTTGAAAGTTCTGTGATTTGTGATTGTTCTTTCAACCATAATTCTTCTTGCCATGTTGTAAGCATATTCTTGAAGGCTCAAAATCTATCTGGCACTCTCTCACCAGAGTTTTCGAAGCTTCGTTATCTCAAAATATTGGACCTTAGTCGTAACATAATCACCGGTTCTATACCTCCACAATGGGCTACAATGAAGTTGACTGAGTTATCTTTCATGGGAAACAGATTATCAGGACCATTCCCTAAAGTTCTAACCAATATCACAACTCTAAAAAATGTGAGTATTGAAGGAAATCTGTTTTCAGGCATCATTCCAACCGAAATTGGAAAGTTGATCAACTTAGAAAAACTCATTCTGCAATCAAATGGATTCACAGGAGCATTGCCGTTTGCGCTTTCCAAGTTGACCAAGTTGACTGATTTGAGGTTAAGCGACAATAATTTCTCCGGGAAGATACCTGATTTCATTAGTAAATGGACAGTGATCGAAAAGCTGCACATTCAAGGTTGCTCTCTTGAAGGACCTATACCTTCCAGCATTTCTGCATTGACAAAATTAAGCGATTTGAGGATAACTGATTTGAAAGGTAGCAAAAGCTCTAATTTTCCACCACTTAATAATATGAAATCCATGAAGACACTAGTTTTGAGAAAATGCTTCCTTAAAGGAGAGATTCCGGAATATATTGGTGAAATGGAAAAACTGAAAGTCTTAGATTTGAGTTTCAATAGCTTGAGTGGAAAGATACCTGAATCCTTTGACGATCTCGACAAAGTGGACTACATGTATCTTACTTCAAACAACTTATCAGGAACGATACCGAGCTGGGTCCTCGCAAATAACAAAAACATTGATGTCTCTTACAATAACTTTGAATGGGAAAGCTCGAGTCCAACTGAATGTCAACGAGGGAGCGTAAACACGGTCGAGAGCTACGCTTTATCTGCAACTAAGAAAAGTAATATTCATTCATGCTTAAAAAGAAACTTCCCGTGTGCGGATAATCCACGACATTACTCCCTGCACATTAATTGTGGCGGTAATGAAGCAAATGTAAGTGGTAGCATCTATAATGCCGACACAGAACGAAAAGGCGCTTCAATGTTCTACTTCTCTCAGGATTGGGCTCTTAGCAGCACAGGGAGCTTTATGGACAATGATCTTGACTCTGATCCTTATATTGTGACCAATACTTCTAGACTTCTTAATGTCTCACGAATCAATTCAAAACTGTACACAACAGCTCGCGTTTCGCCCCTTTCACTCACATACTACGGCCTCTGTATGATAAATGGAAATTACACTGTAAAACTTCACTTTGCAGAGATCATTTTCGTCAACGATAGGTCATTTAACAGTCTCGGGAGACGAATATTTGATGTCTACATCCAGGGGAACTTGGTTCTGAAAGACTTTGATATCGAACGAGAAGCTGGTGGTGCCGAAAAGCCAATCGTGAAGAAATTTAACGCTACTGTCACACAAAATACTTTGAAGATTCAATTCTATTGGGCTGGAAAAGGAACCACCGGTATACCGACAAGAGGAGTTTATGGTCCTTTAGTATCTGCTATATCAGTTGATCCAAATTTTAAACCTCCATCGGATCATGGCAACAGAACTAAGGTCATAATACTGGCAGTTGGCATAGCCAGTGGTGTTCTAGTTGTTTTCCTTCTTATGCTGATTGTCTTGAGGAGGAAGGGATTGTTAGGAGGCAAGGATCCTGTGTATAAAGAGCTTAGGGGTATAGATCTGCAAACAGGATTGTTTACTTTAAGACAAATAAAAGAAGCTACCAAAAACTTCGATGCTGCAAATAAACTTGGCGAAGGTGGCTTTGGTTCTGTTTACAAGGGGCAACTACCAGATGGTACAGTAATTGCAGTAAAGCAGCTGTCGTCAAAATCAAAACAAGGAAACCGCGAGTTTGTGAATGAGATAGGAATGCTATCTGGACTTCAACATCCAAATCTTGTTAAGCTTCATGGATGTTGTGTGGAAGGAAACCAGCTAATACTGATATATGAGTATATGGAAAATAATTGTCTATCTCGCATTCTTTTCGGGAAGGGATCAGACAGTAAAGCGAAACTGGACTGGCTTACCAGGAAGAAAATTTGCCTCGGCATTGCTAAAGCTTTGGCTTATCTTCATGAAGAGTCAAGAATTAAAATCATACATAGGGATATAAAGGCGAGTAATGTGTTGCTGGACAAGGATTTTAATGCCAAAATATCAGATTTTGGTTTGGCCAAACTTATTGAAGATGACAAAACACACGTTAGCACCCGGATTGCAGGAACAATCGGTTATATGGCTCCTGAGTATGCCATGCGCGGTTACTTAACAGACAAAGCAGATGTTTATAGCTTTGGCGTGGTTGCATTGGAAACTATCAGTGGAAAGAGCAATACAAATTACAGGCCGGACGATGAATTTTTCTACCTTCTTGATTGGGCCTATGTTTTACAAGAGAGAGGAACTCTTCTGGAGCTAGTTGATCCAGATTTGGGTTCAGAATATTCGACTGAGGAAGCCACTGTAATGCTAAATGTGGCTCTCTTGTGTACTAATGCATCTCCTACACTTAGGCCAACAATGTGCCAAGTTGTAAGTATGCTCGAAGGTTGGACCGACATTCAAGATCTCCTATCGGATCCGGGATATTCAGCTGCTGGTTCAAGTTCCAAACATAAGAGCATAAGAAGTCACTTCTGGGAGAATCCAAGCAGATCACAAAGCATGTCAGTACCTACTATTTATACCGATTCCACAAACTCGCATGTTGAAACAGAAGAGAGCCATCATCTTGTAAAAATTAACTCAGTTGGATCGGACAAATGA 3069 0.3978 MEFNILFLLLLIVSTSLIFISHLASAATPKLNTLEVKALKEIGNKIGKKDWDFGVDPCSGKAKWNISESPNRKGFESSVICDCSFNHNSSCHVVSIFLKAQNLSGTLSPEFSKLRYLKILDLSRNIITGSIPPQWATMKLTELSFMGNRLSGPFPKVLTNITTLKNVSIEGNLFSGIIPTEIGKLINLEKLILQSNGFTGALPFALSKLTKLTDLRLSDNNFSGKIPDFISKWTVIEKLHIQGCSLEGPIPSSISALTKLSDLRITDLKGSKSSNFPPLNNMKSMKTLVLRKCFLKGEIPEYIGEMEKLKVLDLSFNSLSGKIPESFDDLDKVDYMYLTSNNLSGTIPSWVLANNKNIDVSYNNFEWESSSPTECQRGSVNTVESYALSATKKSNIHSCLKRNFPCADNPRHYSLHINCGGNEANVSGSIYNADTERKGASMFYFSQDWALSSTGSFMDNDLDSDPYIVTNTSRLLNVSRINSKLYTTARVSPLSLTYYGLCMINGNYTVKLHFAEIIFVNDRSFNSLGRRIFDVYIQGNLVLKDFDIEREAGGAEKPIVKKFNATVTQNTLKIQFYWAGKGTTGIPTRGVYGPLVSAISVDPNFKPPSDHGNRTKVIILAVGIASGVLVVFLLMLIVLRRKGLLGGKDPVYKELRGIDLQTGLFTLRQIKEATKNFDAANKLGEGGFGSVYKGQLPDGTVIAVKQLSSKSKQGNREFVNEIGMLSGLQHPNLVKLHGCCVEGNQLILIYEYMENNCLSRILFGKGSDSKAKLDWLTRKKICLGIAKALAYLHEESRIKIIHRDIKASNVLLDKDFNAKISDFGLAKLIEDDKTHVSTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALETISGKSNTNYRPDDEFFYLLDWAYVLQERGTLLELVDPDLGSEYSTEEATVMLNVALLCTNASPTLRPTMCQVVSMLEGWTDIQDLLSDPGYSAAGSSSKHKSIRSHFWENPSRSQSMSVPTIYTDSTNSHVETEESHHLVKINSVGSDK 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04896 1022 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 233 381 - -
Trre9g04896 1022 Gene3D - 411 603 - -
Trre9g04896 1022 ProSitePatterns Protein kinases ATP-binding region signature. 683 705 IPR017441 GO:0005524
Trre9g04896 1022 Gene3D Phosphorylase Kinase; domain 1 651 752 - -
Trre9g04896 1022 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 647 752 - -
Trre9g04896 1022 SMART serkin_6 677 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04896 1022 SUPERFAMILY L domain-like 80 365 - -
Trre9g04896 1022 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 12 988 - -
Trre9g04896 1022 ProSiteProfiles Protein kinase domain profile. 677 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04896 1022 CDD STKc_IRAK 683 951 - -
Trre9g04896 1022 Pfam Protein tyrosine and serine/threonine kinase 680 949 IPR001245 GO:0004672|GO:0006468
Trre9g04896 1022 SUPERFAMILY Protein kinase-like (PK-like) 661 976 IPR011009 -
Trre9g04896 1022 Pfam Malectin domain 414 599 IPR021720 -
Trre9g04896 1022 FunFam Putative LRR receptor-like serine/threonine-protein kinase 753 961 - -
Trre9g04896 1022 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 37 202 - -
Trre9g04896 1022 ProSitePatterns Serine/Threonine protein kinases active-site signature. 800 812 IPR008271 GO:0004672|GO:0006468
Trre9g04896 1022 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 412 604 - -
Trre9g04896 1022 Gene3D Ribonuclease Inhibitor 67 389 IPR032675 -
Trre9g04896 1022 Gene3D Transferase(Phosphotransferase) domain 1 753 961 - -
Trre9g04896 1022 Pfam Leucine rich repeat 284 343 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04896 Trre-Chr9 55282934 55290685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04896 215 1013 Receptor kinase-like Gene Family AT1G07650 63.445 0.0 1009
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre9g04896 PK_Tyr_Ser-Thr 3.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04896 - - gmx:100305357 1659.81