Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04880 ATGGAAGAAGAAAACATGGAAACAGAGAGAAACAGAACCATACCAGCATTTCTCATCCAAAATATGAACACTACTAATACTACTACTGCTGCTACTACCACTCAAAAGTCTCTGCATGTCTTTCGGCGAAGCGGAAGACGGTGCAGAGACAGTGGTAGTAAGGAGATGATGTTGATAAAGGAAGATGCTGAGGAGAAAGAAGAAGATGAAGAAAATGAAGAAGGTGGTGGTGATGATAGAGAAGAGATAGAGAGAAAGATTCATGCATTGCAAAAGATTGTACCAAATGGTGAGTCTTTTGGTGTGGACAAACTTTTTGATGAAACTGCTGGCTATATTATTGCTTTACAATATCAAGTCAAAGCTTTGAAAGCTCTTACTGGTTTCTTTGAAAAGTTGGAGAAAGATAAGACTAAACTTGGAGGTTGA 429 0.3846 MEEENMETERNRTIPAFLIQNMNTTNTTTAATTTQKSLHVFRRSGRRCRDSGSKEMMLIKEDAEEKEEDEENEEGGGDDREEIERKIHALQKIVPNGESFGVDKLFDETAGYIIALQYQVKALKALTGFFEKLEKDKTKLGG 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04880 142 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 37 130 IPR044660 GO:0006355
Trre9g04880 142 MobiDBLite consensus disorder prediction 58 81 - -
Trre9g04880 142 CDD bHLH_AtIBH1_like 81 127 IPR044549 GO:0006355
Trre9g04880 142 MobiDBLite consensus disorder prediction 21 46 - -
Trre9g04880 142 Coils Coil 53 73 - -
Trre9g04880 142 MobiDBLite consensus disorder prediction 21 39 - -
Trre9g04880 142 MobiDBLite consensus disorder prediction 62 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04880 Trre-Chr9 55165201 55165629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04880 83 130 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G47270 38.776 1.35e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04880 - - mtr:11429968 162.155