Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04879 ATGGACTTTTTCTCGGATTATGGCGATGCCAACCGGTATAAAATTCAAGAAGTAATTGGGAAAGGTAGTTATGGTGTTGTTTGTTCAGCTGTTGATACTCATACTGGTGAAAAAGTTGCAATTAAAAAGGTTCACGGTATCTTTGAGCACATATCCGACGCTGCACGTATTCTTCGTGAGATAAAGTTGCTCAGACTTCTTCGACATCCCGATATTGTTGAAATTAAGCACATTATGTTGCCTCCTTCAAGCAGAGAGTTCAAAGATATTTATGTTGTTTTTGAGCTTTTGGAATCTGATCTGCATCAAGTCATTAAAGCCAATGCCGACTTAACAAAAGAGCACTATCAGTTTTTTCTTTATCAGTTACTTCGAGCATTGAAGTATATTCACACCGCAAATGTCTATCATCGAGACTTGAAGCCAAAGAATATACTGGCCAATGCAAACTGTAAACTTAAAATCTGTGATTTTGGGTTAGCTAGAGTTGCTTTCAGTGACACTCCAACAACTGTATTTTGGACGGACTATGTTGCTACAAGGTGGTATAGAGCACCCGAGCTCTGTGGATCATTTTACTCAAAGTATACGCCGGCAATTGATATTTGGAGTATAGGATGCATCTTTGCTGAAGTATTGATAGGAAAACCACTTTTCCCCGGAAAAAGTGTTGTACATCAGTTGGATCTGATCACAGATCTGCTTGGGACCCCCTCAATGGATACTATATCTCGGGTACGCAATGATAAAGCAAGGAGATACCTAACTAGTATGAGGAAAAAGCAACCTATACCATTTGCACAAAAATTTCCTAATGCAGATCCTTTATCACTACGACTACTGGAAAGGTTGCTCGCCTTTGATCCAAAAGACCGGCCTACTGCTGAAGAGGCTTTAGCTGATCCTTACTTCAAGGGACTTGCAAAAATTGAAAGAGAACCATCCTGCGAGCCCATTACACAAATGGAGTTTGAATTTGAAAAGAGAAGAGTAACAAAGGGAGAAATCCGAGACTTGATTTTCCATGAGATTCTAGAGTACCATCCTCAACTAAATGGAACTGAGAGAACTAATTTTCTTTATCCAAGTGCTGTTGATCAATTTGACAAGCAATTCACTCATCTTGAGGAAACTGGTGGTAAAAGTGATCCCGTTGTGCCACTTGAAAGAAAACATGCATCGCTTCCCAGATCAACAATCGTACATTCAAATATGATACCCCAAAAAGAGCAGTCGAATATTGCTTCCAGCAAAAACCGGCAAACAACTGAGGAATATAATACTAAATATATGGAATCCAGCAGCATTCGAGGACTGCAAATAATTCCACTGGAAACACCTGGTAAAGTTGTTAGGCCAGTTGTTAAATATGAGCATGGGAGTATTGTCAATGATTCATATGATTCCAGAACATCAATAAGAGGCAAAACATACCCAACGGTGTTGAATCAAGGCCGAAGTAGCATCAAGTTTAACCATAAGTATTGA 1488 0.3938 MDFFSDYGDANRYKIQEVIGKGSYGVVCSAVDTHTGEKVAIKKVHGIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSSREFKDIYVVFELLESDLHQVIKANADLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFYSKYTPAIDIWSIGCIFAEVLIGKPLFPGKSVVHQLDLITDLLGTPSMDTISRVRNDKARRYLTSMRKKQPIPFAQKFPNADPLSLRLLERLLAFDPKDRPTAEEALADPYFKGLAKIEREPSCEPITQMEFEFEKRRVTKGEIRDLIFHEILEYHPQLNGTERTNFLYPSAVDQFDKQFTHLEETGGKSDPVVPLERKHASLPRSTIVHSNMIPQKEQSNIASSKNRQTTEEYNTKYMESSSIRGLQIIPLETPGKVVRPVVKYEHGSIVNDSYDSRTSIRGKTYPTVLNQGRSSIKFNHKY 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04879 495 ProSitePatterns MAP kinase signature. 48 151 IPR003527 GO:0004707|GO:0005524|GO:0006468
Trre9g04879 495 Gene3D Transferase(Phosphotransferase) domain 1 99 327 - -
Trre9g04879 495 SMART serkin_6 13 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04879 495 ProSiteProfiles Protein kinase domain profile. 13 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04879 495 Gene3D Phosphorylase Kinase; domain 1 28 350 - -
Trre9g04879 495 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 12 355 - -
Trre9g04879 495 SUPERFAMILY Protein kinase-like (PK-like) 9 308 IPR011009 -
Trre9g04879 495 FunFam Mitogen-activated protein kinase 4 107 - -
Trre9g04879 495 Pfam Protein kinase domain 13 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04879 495 ProSitePatterns Protein kinases ATP-binding region signature. 19 43 IPR017441 GO:0005524
Trre9g04879 495 CDD STKc_TDY_MAPK 12 349 - -
Trre9g04879 495 FunFam Mitogen-activated protein kinase 99 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04879 Trre-Chr9 55153663 55158317 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04879 1 440 MAP Kinase Gene Family AT2G42880 81.573 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Trre9g04879 Pkinase 4.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04879 - - tpra:123882256 934.48