Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04878 ATGCATAAAGGAAAGAAATCACTGGACATGGACTTTTTCTCGGATTATGGCGATGCCAACCGGTATAAAATTCAAGAAGTAATTGGGAAAGGTAGTTATGGTGTTGTTTGTTCAGCTGTTGATACTCATACTGGTGAAAAAGTTGCAATTAAAAAGGTTCACGGTATCTTTGAGCACATATCCGACGCTGCACGTATTCTTCGTGAGATAAAGTTGCTCAGACTTCTTCGACATCCCGATATTGTTGAAATTAAGCACATTATGTTGCCTCCTTCAAGCAGAGAGTTCAAAGATATTTATGTTGTTTTTGAGCTTTTGGAATCTGATCTGCATCAAGTCATTAAAGCCAATGCCGACTTAACAAAAGAGCACTATCAGTTTTTTCTTTATCAGTTACTTCGAGCATTGAAGTATATTCACACCGCAAATGTCTATCATCGAGACTTGAAGCCAAAGAATATACTGGCCAATGCAAACTGTAAACTTAAAATCTGTGATTTTGGGTTAGCTAGAGTTGCTTTCAGTGACACTCCAACAACTGTATTTTGGACGGACTATGTTGCTACAAGGTGGTATAGAGCACCCGAGCTCTGTGGATCATTTTACTCAAAGTATACGCCGGCAATTGATATTTGGAGTATAGGATGCATCTTTGCTGAAGTATTGATAGGAAAACCACTTTTCCCCGGAAAAAGTGTTGTACATCAGTTGGATCTGATCACAGATCTGCTTGGGACCCCCTCAATGGATACTATATCTCGGGTACGCAATGATAAAGCAAGGAGATACCTAACTAGTATGAGGAAAAAGCAACCTATACCATTTGCACAAAAATTTCCTAATGCAGATCCTTTATCACTACGACTACTGGAAAGGTTGCTCGCCTTTGATCCAAAAGACCGGCCTACTGCTGAAGAGGCTTTAGCTGATCCTTACTTCAAGGGACTTGCAAAAATTGAAAGAGAACCATCCTGCGAGCCCATTACACAAATGGAGTTTGAATTTGAAAAGAGAAGAGTAACAAAGGGAGAAATCCGAGACTTGATTTTCCATGAGATTCTAGAGTACCATCCTCAACTAAATGGAACTGAGAGAACTAATTTTCTTTATCCAAGTGCTGTTGATCAATTTGACAAGCAATTCACTCATCTTGAGGAAACTGGTGGTAAAAGTGATCCCGTTGTGCCACTTGAAAGAAAACATGCATCGCTTCCCAGATCAACAATCGTACATTCAAATATGATACCCCAAAAAGAGCAGTCGAATATTGCTTCCAGCAAAAACCGGCAAACAACTGAGGAATATAATACTAAATATATGGAATCCAGCAGCATTCGAGGACTGCAAATAATTCCACTGGAAACACCTGGTAAAGTTGTTAGGCCAGTTGTTAAATATGAGCATGGGAGTATTGTCAATGATTCATATGATTCCAGAACATCAATAAGAGGCAAAACATACCCAACGGTGTTGAATCAAGGCCGAAGTAGCATCAAGTTTAACCATAAGTATTGA 1515 0.3934 MHKGKKSLDMDFFSDYGDANRYKIQEVIGKGSYGVVCSAVDTHTGEKVAIKKVHGIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSSREFKDIYVVFELLESDLHQVIKANADLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFYSKYTPAIDIWSIGCIFAEVLIGKPLFPGKSVVHQLDLITDLLGTPSMDTISRVRNDKARRYLTSMRKKQPIPFAQKFPNADPLSLRLLERLLAFDPKDRPTAEEALADPYFKGLAKIEREPSCEPITQMEFEFEKRRVTKGEIRDLIFHEILEYHPQLNGTERTNFLYPSAVDQFDKQFTHLEETGGKSDPVVPLERKHASLPRSTIVHSNMIPQKEQSNIASSKNRQTTEEYNTKYMESSSIRGLQIIPLETPGKVVRPVVKYEHGSIVNDSYDSRTSIRGKTYPTVLNQGRSSIKFNHKY 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04878 504 SUPERFAMILY Protein kinase-like (PK-like) 18 317 IPR011009 -
Trre9g04878 504 FunFam Mitogen-activated protein kinase 12 116 - -
Trre9g04878 504 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 21 364 - -
Trre9g04878 504 SMART serkin_6 22 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04878 504 Gene3D Phosphorylase Kinase; domain 1 37 359 - -
Trre9g04878 504 Gene3D Transferase(Phosphotransferase) domain 1 108 336 - -
Trre9g04878 504 ProSitePatterns MAP kinase signature. 57 160 IPR003527 GO:0004707|GO:0005524|GO:0006468
Trre9g04878 504 Pfam Protein kinase domain 22 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04878 504 ProSiteProfiles Protein kinase domain profile. 22 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04878 504 ProSitePatterns Protein kinases ATP-binding region signature. 28 52 IPR017441 GO:0005524
Trre9g04878 504 CDD STKc_TDY_MAPK 21 358 - -
Trre9g04878 504 FunFam Mitogen-activated protein kinase 108 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04878 Trre-Chr9 55152728 55158317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04878 2 449 MAP Kinase Gene Family AT2G42880 80.574 0.0 753
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Trre9g04878 Pkinase 4.8e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04878 - - tpra:123882256 942.184